Results 41 - 60 of 323 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 15134 | 0.66 | 0.485502 |
Target: 5'- uCGGGGgGuuCgCCG-UCCCCGGCGCCc -3' miRNA: 3'- -GCUCCgCugG-GGCgGGGGGCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 26456 | 0.66 | 0.485502 |
Target: 5'- gGAcGCGGgCCCGCCCCCgcaGAuaCGCUg -3' miRNA: 3'- gCUcCGCUgGGGCGGGGGg--CU--GCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 61696 | 0.66 | 0.485502 |
Target: 5'- -aAGGCGAUCCUGgCCCgCaCGACgGCCc -3' miRNA: 3'- gcUCCGCUGGGGCgGGG-G-GCUG-CGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 91314 | 0.66 | 0.485502 |
Target: 5'- gGGGGCaaaaaACCCagaCGCCgCCCGAgcCGCCGg -3' miRNA: 3'- gCUCCGc----UGGG---GCGGgGGGCU--GCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 115318 | 0.66 | 0.485502 |
Target: 5'- cCGGGGaccugGugCCCGCCCCCg---GCCAc -3' miRNA: 3'- -GCUCCg----CugGGGCGGGGGgcugCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 7634 | 0.66 | 0.485502 |
Target: 5'- gCGcGGacCGGCCCCcggaGUCCCCCGGCuCCGa -3' miRNA: 3'- -GCuCC--GCUGGGG----CGGGGGGCUGcGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 61464 | 0.66 | 0.484625 |
Target: 5'- cCGGGGCcuccgGGCCCCGgagggcuacuuuaCCCCCau-CGCCGu -3' miRNA: 3'- -GCUCCG-----CUGGGGC-------------GGGGGgcuGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 67114 | 0.66 | 0.468106 |
Target: 5'- ---cGCGGCCCCGacgucCUUCUCGGCGCCGc -3' miRNA: 3'- gcucCGCUGGGGC-----GGGGGGCUGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 97136 | 0.66 | 0.468106 |
Target: 5'- --cGGCGAUCgCGCCCgCCacuccaccaugGACGCCu -3' miRNA: 3'- gcuCCGCUGGgGCGGGgGG-----------CUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 97061 | 0.66 | 0.47156 |
Target: 5'- gGAGGCGcaugacguguuucagGCCacuaCGCCCggCCUGuACGCCAu -3' miRNA: 3'- gCUCCGC---------------UGGg---GCGGG--GGGC-UGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 58656 | 0.66 | 0.475895 |
Target: 5'- --cGGCGGCgguugucccgaggCCCGCCaCCaCCGcCGCCGu -3' miRNA: 3'- gcuCCGCUG-------------GGGCGG-GG-GGCuGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 25711 | 0.66 | 0.476765 |
Target: 5'- -uGGGCGGgcaacuggaCCgGCgCCCCCGACGUCu -3' miRNA: 3'- gcUCCGCUg--------GGgCG-GGGGGCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 51105 | 0.66 | 0.476765 |
Target: 5'- aGAuGGCGAgCgaagagCCGCCCCCgCGccguCGCCGg -3' miRNA: 3'- gCU-CCGCUgG------GGCGGGGG-GCu---GCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 136828 | 0.66 | 0.476765 |
Target: 5'- gCGuGGCGGgCCaCGaCCCCCaaccACGCCGa -3' miRNA: 3'- -GCuCCGCUgGG-GC-GGGGGgc--UGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 27962 | 0.66 | 0.476765 |
Target: 5'- --cGGCGcuccaGCCgugCCGCgCCCCGGCGCUc -3' miRNA: 3'- gcuCCGC-----UGG---GGCGgGGGGCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 84111 | 0.66 | 0.476765 |
Target: 5'- -cGGGCGuCCaggccgaggCGCCCCuuGACGUCGu -3' miRNA: 3'- gcUCCGCuGGg--------GCGGGGggCUGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 128764 | 0.66 | 0.476765 |
Target: 5'- --uGGC--CCCCGCCCCCCaGACcCCc -3' miRNA: 3'- gcuCCGcuGGGGCGGGGGG-CUGcGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 154098 | 0.66 | 0.48025 |
Target: 5'- cCGGGGCgcggccggcgccgggGACCCCGgCggcggggaCCCCGGCGgCGg -3' miRNA: 3'- -GCUCCG---------------CUGGGGCgG--------GGGGCUGCgGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 23857 | 0.66 | 0.484625 |
Target: 5'- -uGGGCGACagCCGCCCCggCCucuggggGGCGCCc -3' miRNA: 3'- gcUCCGCUGg-GGCGGGG--GG-------CUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 92928 | 0.66 | 0.484625 |
Target: 5'- uCGAGGCGgucgucgGgCCCGCCg-CCGugGCCc -3' miRNA: 3'- -GCUCCGC-------UgGGGCGGggGGCugCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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