Results 81 - 100 of 323 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 55013 | 0.66 | 0.459529 |
Target: 5'- gCGGGGCcGCCCUGCCgggaGACGCCc -3' miRNA: 3'- -GCUCCGcUGGGGCGGggggCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 20019 | 0.66 | 0.459529 |
Target: 5'- cCGGGGagGGCCCC-CCCUCCG-UGUCGg -3' miRNA: 3'- -GCUCCg-CUGGGGcGGGGGGCuGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 29499 | 0.66 | 0.456972 |
Target: 5'- aCGGGGCcGCCCCGagagggggggauucCCUCCCucCGCCc -3' miRNA: 3'- -GCUCCGcUGGGGC--------------GGGGGGcuGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 82801 | 0.66 | 0.454423 |
Target: 5'- cCGAGGCgcucGACCCCcUCCCaCCGGaaccgcauugcccccCGCCGa -3' miRNA: 3'- -GCUCCG----CUGGGGcGGGG-GGCU---------------GCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 107077 | 0.66 | 0.451036 |
Target: 5'- gGAGGCuGugggcccgcaaGCCCCG-CCCCCGGC-CCu -3' miRNA: 3'- gCUCCG-C-----------UGGGGCgGGGGGCUGcGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 117527 | 0.66 | 0.451036 |
Target: 5'- uGGGGcCGGCCCaGCCCcuCCCGgucuuuggcuGCGCCc -3' miRNA: 3'- gCUCC-GCUGGGgCGGG--GGGC----------UGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 21814 | 0.66 | 0.450192 |
Target: 5'- uCGGGGCGGagCCCGCgggaugacgcgggCCCCgggcagGGCGCCAg -3' miRNA: 3'- -GCUCCGCUg-GGGCG-------------GGGGg-----CUGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 128363 | 0.66 | 0.459529 |
Target: 5'- aCGAGGCGGCgaCGCaaaaCCaggCCGACuGCCAg -3' miRNA: 3'- -GCUCCGCUGggGCGg---GG---GGCUG-CGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 147913 | 0.66 | 0.459529 |
Target: 5'- gGGGGCaggcgcgggucgGGCCcguacgcccaCCGCCCCCaCG-CGCCGg -3' miRNA: 3'- gCUCCG------------CUGG----------GGCGGGGG-GCuGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 145536 | 0.66 | 0.459529 |
Target: 5'- ---cGCGcCCCCGCCCggccgCCCGcgucGCGCCGg -3' miRNA: 3'- gcucCGCuGGGGCGGG-----GGGC----UGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 97061 | 0.66 | 0.47156 |
Target: 5'- gGAGGCGcaugacguguuucagGCCacuaCGCCCggCCUGuACGCCAu -3' miRNA: 3'- gCUCCGC---------------UGGg---GCGGG--GGGC-UGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 97136 | 0.66 | 0.468106 |
Target: 5'- --cGGCGAUCgCGCCCgCCacuccaccaugGACGCCu -3' miRNA: 3'- gcuCCGCUGGgGCGGGgGG-----------CUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 67114 | 0.66 | 0.468106 |
Target: 5'- ---cGCGGCCCCGacgucCUUCUCGGCGCCGc -3' miRNA: 3'- gcucCGCUGGGGC-----GGGGGGCUGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 21155 | 0.66 | 0.468106 |
Target: 5'- --cGGCccguccCCCCGuCCCCCCGGC-CCGu -3' miRNA: 3'- gcuCCGcu----GGGGC-GGGGGGCUGcGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 21113 | 0.66 | 0.468106 |
Target: 5'- --cGGCccguccCCCCGuCCCCCCGGC-CCGu -3' miRNA: 3'- gcuCCGcu----GGGGC-GGGGGGCUGcGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 116770 | 0.66 | 0.468106 |
Target: 5'- aCGAcGGCGcuGCUgUGCUCCgCGGCGCCc -3' miRNA: 3'- -GCU-CCGC--UGGgGCGGGGgGCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 81007 | 0.66 | 0.468106 |
Target: 5'- -uGGGaaGCCCCggaGCCCCCCGGCcCCc -3' miRNA: 3'- gcUCCgcUGGGG---CGGGGGGCUGcGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 134368 | 0.66 | 0.468106 |
Target: 5'- uGGGGCccGCCggCCGCUCCUCG-CGCCGc -3' miRNA: 3'- gCUCCGc-UGG--GGCGGGGGGCuGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 123227 | 0.66 | 0.467245 |
Target: 5'- gCGGGGCGgcuacgggacccgGCCuuGUCCgCUGACGCg- -3' miRNA: 3'- -GCUCCGC-------------UGGggCGGGgGGCUGCGgu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 153189 | 0.66 | 0.46295 |
Target: 5'- cCGAGGCcGCCCuCGCcgguucaacccuagaCCgCCCGACgGCCc -3' miRNA: 3'- -GCUCCGcUGGG-GCG---------------GG-GGGCUG-CGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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