miRNA display CGI


Results 101 - 120 of 323 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 67570 0.66 0.44263
Target:  5'- gGGGGCGACCUCgGgCUCCCGGgGUUc -3'
miRNA:   3'- gCUCCGCUGGGG-CgGGGGGCUgCGGu -5'
5188 5' -66.8 NC_001798.1 + 27518 0.66 0.44263
Target:  5'- gGGGGCG-CCCgcgggaaggcaGCCCCgCGGCGCgCGg -3'
miRNA:   3'- gCUCCGCuGGGg----------CGGGGgGCUGCG-GU- -5'
5188 5' -66.8 NC_001798.1 + 104295 0.66 0.440125
Target:  5'- --uGGCG-CCCgaguccaauccggaCGCCCCCCGAgcgauggccucCGCCGg -3'
miRNA:   3'- gcuCCGCuGGG--------------GCGGGGGGCU-----------GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 58297 0.66 0.437629
Target:  5'- cCGGGGCGcgagggucugacacaGCUCCGUCaggCCCGcCGCCGc -3'
miRNA:   3'- -GCUCCGC---------------UGGGGCGGg--GGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 1874 0.66 0.437629
Target:  5'- uGAGGCGGCggucgcaggcgccggCCagcaGCCCCaggaacuccaCGGCGCCGg -3'
miRNA:   3'- gCUCCGCUG---------------GGg---CGGGGg---------GCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 82801 0.66 0.454423
Target:  5'- cCGAGGCgcucGACCCCcUCCCaCCGGaaccgcauugcccccCGCCGa -3'
miRNA:   3'- -GCUCCG----CUGGGGcGGGG-GGCU---------------GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 29499 0.66 0.456972
Target:  5'- aCGGGGCcGCCCCGagagggggggauucCCUCCCucCGCCc -3'
miRNA:   3'- -GCUCCGcUGGGGC--------------GGGGGGcuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 116770 0.66 0.468106
Target:  5'- aCGAcGGCGcuGCUgUGCUCCgCGGCGCCc -3'
miRNA:   3'- -GCU-CCGC--UGGgGCGGGGgGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 81007 0.66 0.468106
Target:  5'- -uGGGaaGCCCCggaGCCCCCCGGCcCCc -3'
miRNA:   3'- gcUCCgcUGGGG---CGGGGGGCUGcGGu -5'
5188 5' -66.8 NC_001798.1 + 134368 0.66 0.468106
Target:  5'- uGGGGCccGCCggCCGCUCCUCG-CGCCGc -3'
miRNA:   3'- gCUCCGc-UGG--GGCGGGGGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 123227 0.66 0.467245
Target:  5'- gCGGGGCGgcuacgggacccgGCCuuGUCCgCUGACGCg- -3'
miRNA:   3'- -GCUCCGC-------------UGGggCGGGgGGCUGCGgu -5'
5188 5' -66.8 NC_001798.1 + 153189 0.66 0.46295
Target:  5'- cCGAGGCcGCCCuCGCcgguucaacccuagaCCgCCCGACgGCCc -3'
miRNA:   3'- -GCUCCGcUGGG-GCG---------------GG-GGGCUG-CGGu -5'
5188 5' -66.8 NC_001798.1 + 145536 0.66 0.459529
Target:  5'- ---cGCGcCCCCGCCCggccgCCCGcgucGCGCCGg -3'
miRNA:   3'- gcucCGCuGGGGCGGG-----GGGC----UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 147913 0.66 0.459529
Target:  5'- gGGGGCaggcgcgggucgGGCCcguacgcccaCCGCCCCCaCG-CGCCGg -3'
miRNA:   3'- gCUCCG------------CUGG----------GGCGGGGG-GCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 128363 0.66 0.459529
Target:  5'- aCGAGGCGGCgaCGCaaaaCCaggCCGACuGCCAg -3'
miRNA:   3'- -GCUCCGCUGggGCGg---GG---GGCUG-CGGU- -5'
5188 5' -66.8 NC_001798.1 + 125347 0.66 0.459529
Target:  5'- uGuGGUcGCCCCcaaagucacGCCCCCUGaguuGCGCCGg -3'
miRNA:   3'- gCuCCGcUGGGG---------CGGGGGGC----UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 111604 0.66 0.459529
Target:  5'- gCGGGGCGGCCUCcuggaGCCCCgggGGCGgCAg -3'
miRNA:   3'- -GCUCCGCUGGGG-----CGGGGgg-CUGCgGU- -5'
5188 5' -66.8 NC_001798.1 + 66817 0.66 0.459529
Target:  5'- cCGucGCGgaGCCCgGCCCggugCCGGCGCCc -3'
miRNA:   3'- -GCucCGC--UGGGgCGGGg---GGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 55013 0.66 0.459529
Target:  5'- gCGGGGCcGCCCUGCCgggaGACGCCc -3'
miRNA:   3'- -GCUCCGcUGGGGCGGggggCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 20019 0.66 0.459529
Target:  5'- cCGGGGagGGCCCC-CCCUCCG-UGUCGg -3'
miRNA:   3'- -GCUCCg-CUGGGGcGGGGGGCuGCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.