miRNA display CGI


Results 121 - 140 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 30850 0.66 0.433487
Target:  5'- uGGGGgGacacacgguccgcGCCCUGucgcccacCCCCCCGugGCCc -3'
miRNA:   3'- gCUCCgC-------------UGGGGC--------GGGGGGCugCGGu -5'
5188 5' -66.8 NC_001798.1 + 114832 0.67 0.426088
Target:  5'- cCGuGGCcguGCCCCGCCUgaCGcACGCCGa -3'
miRNA:   3'- -GCuCCGc--UGGGGCGGGggGC-UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 148853 0.66 0.44263
Target:  5'- gGGGGCGGCuucucgugCCCGCCCCCCcucCuCCu -3'
miRNA:   3'- gCUCCGCUG--------GGGCGGGGGGcu-GcGGu -5'
5188 5' -66.8 NC_001798.1 + 149980 0.66 0.44263
Target:  5'- gGGGGCG-CggCGCCCgCgGACGCCGg -3'
miRNA:   3'- gCUCCGCuGggGCGGGgGgCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 28688 0.66 0.44263
Target:  5'- cCGAGGCggucaucgGACCgUGCCUggagCCCGAgGCCc -3'
miRNA:   3'- -GCUCCG--------CUGGgGCGGG----GGGCUgCGGu -5'
5188 5' -66.8 NC_001798.1 + 145536 0.66 0.459529
Target:  5'- ---cGCGcCCCCGCCCggccgCCCGcgucGCGCCGg -3'
miRNA:   3'- gcucCGCuGGGGCGGG-----GGGC----UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 147913 0.66 0.459529
Target:  5'- gGGGGCaggcgcgggucgGGCCcguacgcccaCCGCCCCCaCG-CGCCGg -3'
miRNA:   3'- gCUCCG------------CUGG----------GGCGGGGG-GCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 128363 0.66 0.459529
Target:  5'- aCGAGGCGGCgaCGCaaaaCCaggCCGACuGCCAg -3'
miRNA:   3'- -GCUCCGCUGggGCGg---GG---GGCUG-CGGU- -5'
5188 5' -66.8 NC_001798.1 + 125347 0.66 0.459529
Target:  5'- uGuGGUcGCCCCcaaagucacGCCCCCUGaguuGCGCCGg -3'
miRNA:   3'- gCuCCGcUGGGG---------CGGGGGGC----UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 111604 0.66 0.459529
Target:  5'- gCGGGGCGGCCUCcuggaGCCCCgggGGCGgCAg -3'
miRNA:   3'- -GCUCCGCUGGGG-----CGGGGgg-CUGCgGU- -5'
5188 5' -66.8 NC_001798.1 + 66817 0.66 0.459529
Target:  5'- cCGucGCGgaGCCCgGCCCggugCCGGCGCCc -3'
miRNA:   3'- -GCucCGC--UGGGgCGGGg---GGCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 55013 0.66 0.459529
Target:  5'- gCGGGGCcGCCCUGCCgggaGACGCCc -3'
miRNA:   3'- -GCUCCGcUGGGGCGGggggCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 20019 0.66 0.459529
Target:  5'- cCGGGGagGGCCCC-CCCUCCG-UGUCGg -3'
miRNA:   3'- -GCUCCg-CUGGGGcGGGGGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 29499 0.66 0.456972
Target:  5'- aCGGGGCcGCCCCGagagggggggauucCCUCCCucCGCCc -3'
miRNA:   3'- -GCUCCGcUGGGGC--------------GGGGGGcuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 82801 0.66 0.454423
Target:  5'- cCGAGGCgcucGACCCCcUCCCaCCGGaaccgcauugcccccCGCCGa -3'
miRNA:   3'- -GCUCCG----CUGGGGcGGGG-GGCU---------------GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 107077 0.66 0.451036
Target:  5'- gGAGGCuGugggcccgcaaGCCCCG-CCCCCGGC-CCu -3'
miRNA:   3'- gCUCCG-C-----------UGGGGCgGGGGGCUGcGGu -5'
5188 5' -66.8 NC_001798.1 + 117527 0.66 0.451036
Target:  5'- uGGGGcCGGCCCaGCCCcuCCCGgucuuuggcuGCGCCc -3'
miRNA:   3'- gCUCC-GCUGGGgCGGG--GGGC----------UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 21814 0.66 0.450192
Target:  5'- uCGGGGCGGagCCCGCgggaugacgcgggCCCCgggcagGGCGCCAg -3'
miRNA:   3'- -GCUCCGCUg-GGGCG-------------GGGGg-----CUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 13658 0.66 0.450192
Target:  5'- gGAGucccaccGCGACaacuagcagggCCGCCgUCCCGACGCCGg -3'
miRNA:   3'- gCUC-------CGCUGg----------GGCGG-GGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 15529 0.66 0.445982
Target:  5'- gGAGGCgcugcugguguucguGugCCCGgCCCCgGGCGUUg -3'
miRNA:   3'- gCUCCG---------------CugGGGCgGGGGgCUGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.