Results 121 - 140 of 323 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 30850 | 0.66 | 0.433487 |
Target: 5'- uGGGGgGacacacgguccgcGCCCUGucgcccacCCCCCCGugGCCc -3' miRNA: 3'- gCUCCgC-------------UGGGGC--------GGGGGGCugCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 114832 | 0.67 | 0.426088 |
Target: 5'- cCGuGGCcguGCCCCGCCUgaCGcACGCCGa -3' miRNA: 3'- -GCuCCGc--UGGGGCGGGggGC-UGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 148853 | 0.66 | 0.44263 |
Target: 5'- gGGGGCGGCuucucgugCCCGCCCCCCcucCuCCu -3' miRNA: 3'- gCUCCGCUG--------GGGCGGGGGGcu-GcGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 149980 | 0.66 | 0.44263 |
Target: 5'- gGGGGCG-CggCGCCCgCgGACGCCGg -3' miRNA: 3'- gCUCCGCuGggGCGGGgGgCUGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 28688 | 0.66 | 0.44263 |
Target: 5'- cCGAGGCggucaucgGACCgUGCCUggagCCCGAgGCCc -3' miRNA: 3'- -GCUCCG--------CUGGgGCGGG----GGGCUgCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 145536 | 0.66 | 0.459529 |
Target: 5'- ---cGCGcCCCCGCCCggccgCCCGcgucGCGCCGg -3' miRNA: 3'- gcucCGCuGGGGCGGG-----GGGC----UGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 147913 | 0.66 | 0.459529 |
Target: 5'- gGGGGCaggcgcgggucgGGCCcguacgcccaCCGCCCCCaCG-CGCCGg -3' miRNA: 3'- gCUCCG------------CUGG----------GGCGGGGG-GCuGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 128363 | 0.66 | 0.459529 |
Target: 5'- aCGAGGCGGCgaCGCaaaaCCaggCCGACuGCCAg -3' miRNA: 3'- -GCUCCGCUGggGCGg---GG---GGCUG-CGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 125347 | 0.66 | 0.459529 |
Target: 5'- uGuGGUcGCCCCcaaagucacGCCCCCUGaguuGCGCCGg -3' miRNA: 3'- gCuCCGcUGGGG---------CGGGGGGC----UGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 111604 | 0.66 | 0.459529 |
Target: 5'- gCGGGGCGGCCUCcuggaGCCCCgggGGCGgCAg -3' miRNA: 3'- -GCUCCGCUGGGG-----CGGGGgg-CUGCgGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 66817 | 0.66 | 0.459529 |
Target: 5'- cCGucGCGgaGCCCgGCCCggugCCGGCGCCc -3' miRNA: 3'- -GCucCGC--UGGGgCGGGg---GGCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 55013 | 0.66 | 0.459529 |
Target: 5'- gCGGGGCcGCCCUGCCgggaGACGCCc -3' miRNA: 3'- -GCUCCGcUGGGGCGGggggCUGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 20019 | 0.66 | 0.459529 |
Target: 5'- cCGGGGagGGCCCC-CCCUCCG-UGUCGg -3' miRNA: 3'- -GCUCCg-CUGGGGcGGGGGGCuGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 29499 | 0.66 | 0.456972 |
Target: 5'- aCGGGGCcGCCCCGagagggggggauucCCUCCCucCGCCc -3' miRNA: 3'- -GCUCCGcUGGGGC--------------GGGGGGcuGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 82801 | 0.66 | 0.454423 |
Target: 5'- cCGAGGCgcucGACCCCcUCCCaCCGGaaccgcauugcccccCGCCGa -3' miRNA: 3'- -GCUCCG----CUGGGGcGGGG-GGCU---------------GCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 107077 | 0.66 | 0.451036 |
Target: 5'- gGAGGCuGugggcccgcaaGCCCCG-CCCCCGGC-CCu -3' miRNA: 3'- gCUCCG-C-----------UGGGGCgGGGGGCUGcGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 117527 | 0.66 | 0.451036 |
Target: 5'- uGGGGcCGGCCCaGCCCcuCCCGgucuuuggcuGCGCCc -3' miRNA: 3'- gCUCC-GCUGGGgCGGG--GGGC----------UGCGGu -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 21814 | 0.66 | 0.450192 |
Target: 5'- uCGGGGCGGagCCCGCgggaugacgcgggCCCCgggcagGGCGCCAg -3' miRNA: 3'- -GCUCCGCUg-GGGCG-------------GGGGg-----CUGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 13658 | 0.66 | 0.450192 |
Target: 5'- gGAGucccaccGCGACaacuagcagggCCGCCgUCCCGACGCCGg -3' miRNA: 3'- gCUC-------CGCUGg----------GGCGG-GGGGCUGCGGU- -5' |
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5188 | 5' | -66.8 | NC_001798.1 | + | 15529 | 0.66 | 0.445982 |
Target: 5'- gGAGGCgcugcugguguucguGugCCCGgCCCCgGGCGUUg -3' miRNA: 3'- gCUCCG---------------CugGGGCgGGGGgCUGCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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