miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5190 3' -52.8 NC_001798.1 + 131917 0.66 0.977711
Target:  5'- gCAGCUGG-GCcGCgUCGACgcguuGAUGCu -3'
miRNA:   3'- aGUCGAUCuCGaCGaAGCUG-----CUACGc -5'
5190 3' -52.8 NC_001798.1 + 28840 0.66 0.977711
Target:  5'- gCGGuCUAGGGUUGaacCGGCGAggGCGg -3'
miRNA:   3'- aGUC-GAUCUCGACgaaGCUGCUa-CGC- -5'
5190 3' -52.8 NC_001798.1 + 2496 0.66 0.972747
Target:  5'- gUCAGCgccgcGGGGCgcggcggccgcggcgGCggcgUCGGCGggGCGg -3'
miRNA:   3'- -AGUCGa----UCUCGa--------------CGa---AGCUGCuaCGC- -5'
5190 3' -52.8 NC_001798.1 + 76489 0.66 0.971607
Target:  5'- gCAGCUcGGGGCUggccgaacugcagcGCUUCGACGcccucgacGCGg -3'
miRNA:   3'- aGUCGA-UCUCGA--------------CGAAGCUGCua------CGC- -5'
5190 3' -52.8 NC_001798.1 + 11965 0.66 0.970731
Target:  5'- cCAGCUccagggcggauaggcGGGGCUGUgggCGugG-UGCGu -3'
miRNA:   3'- aGUCGA---------------UCUCGACGaa-GCugCuACGC- -5'
5190 3' -52.8 NC_001798.1 + 81422 0.66 0.966382
Target:  5'- aCGGcCUGGAGgaGCUggcgucCGACGAcgccgGCGg -3'
miRNA:   3'- aGUC-GAUCUCgaCGAa-----GCUGCUa----CGC- -5'
5190 3' -52.8 NC_001798.1 + 154062 0.66 0.966382
Target:  5'- aCGGCUGGAGC-GCcggGGCGcgGCa -3'
miRNA:   3'- aGUCGAUCUCGaCGaagCUGCuaCGc -5'
5190 3' -52.8 NC_001798.1 + 105302 0.67 0.963009
Target:  5'- cCAGCgccuccAGGGCg---UCGGCGAUGUGa -3'
miRNA:   3'- aGUCGa-----UCUCGacgaAGCUGCUACGC- -5'
5190 3' -52.8 NC_001798.1 + 77977 0.67 0.963009
Target:  5'- cUCGGCUGGAGCgcgGCgUUCcACGccGCc -3'
miRNA:   3'- -AGUCGAUCUCGa--CG-AAGcUGCuaCGc -5'
5190 3' -52.8 NC_001798.1 + 72379 0.67 0.963009
Target:  5'- cCAGCUGGAggacgcgaucguGCUGCUgCGGCugcacAUGCGc -3'
miRNA:   3'- aGUCGAUCU------------CGACGAaGCUGc----UACGC- -5'
5190 3' -52.8 NC_001798.1 + 126345 0.67 0.961596
Target:  5'- cCAGCUuccgGGAGCgGCUUCGcGCGGgacugucccgaugGCGa -3'
miRNA:   3'- aGUCGA----UCUCGaCGAAGC-UGCUa------------CGC- -5'
5190 3' -52.8 NC_001798.1 + 97236 0.67 0.959407
Target:  5'- -gAGCUGGcGCUGUUcgggCGGCGG-GCGg -3'
miRNA:   3'- agUCGAUCuCGACGAa---GCUGCUaCGC- -5'
5190 3' -52.8 NC_001798.1 + 23027 0.67 0.959407
Target:  5'- gCAGCUGGccCUGCUggccUCGAUGGUGg- -3'
miRNA:   3'- aGUCGAUCucGACGA----AGCUGCUACgc -5'
5190 3' -52.8 NC_001798.1 + 26361 0.67 0.955571
Target:  5'- cCGGC-GGAGCUGCgcgggccgCGGCGGgaguucUGCGc -3'
miRNA:   3'- aGUCGaUCUCGACGaa------GCUGCU------ACGC- -5'
5190 3' -52.8 NC_001798.1 + 83974 0.67 0.955571
Target:  5'- -gGGCgAGGGcCUGC-UCGGCGgcGCGa -3'
miRNA:   3'- agUCGaUCUC-GACGaAGCUGCuaCGC- -5'
5190 3' -52.8 NC_001798.1 + 25799 0.67 0.946732
Target:  5'- cCGGCgccguggaguuccUGGGGCUGCUggcCGGCGccUGCGa -3'
miRNA:   3'- aGUCG-------------AUCUCGACGAa--GCUGCu-ACGC- -5'
5190 3' -52.8 NC_001798.1 + 141568 0.67 0.942614
Target:  5'- uUCGcGgaGGAGCUGCggCGGCGGcacGCGa -3'
miRNA:   3'- -AGU-CgaUCUCGACGaaGCUGCUa--CGC- -5'
5190 3' -52.8 NC_001798.1 + 13239 0.68 0.9378
Target:  5'- cCAGC-GGGGCUGCgUUCGgAUGggGCa -3'
miRNA:   3'- aGUCGaUCUCGACG-AAGC-UGCuaCGc -5'
5190 3' -52.8 NC_001798.1 + 19877 0.68 0.92742
Target:  5'- uUCGGC-GGAGCUGgUaUCGGCGAccaccGCGg -3'
miRNA:   3'- -AGUCGaUCUCGACgA-AGCUGCUa----CGC- -5'
5190 3' -52.8 NC_001798.1 + 18768 0.68 0.92742
Target:  5'- cCGGCUcuguGGAGUuuucUGCUUCGGCaAUGCc -3'
miRNA:   3'- aGUCGA----UCUCG----ACGAAGCUGcUACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.