Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5195 | 3' | -62.4 | NC_001798.1 | + | 35425 | 0.66 | 0.600675 |
Target: 5'- gGCCUaaugcggcgggaGGCg-UGGGCCGCUGgcgCCGCGg -3' miRNA: 3'- aUGGG------------UCGagACCCGGCGGUa--GGCGU- -5' |
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5195 | 3' | -62.4 | NC_001798.1 | + | 40818 | 0.66 | 0.600675 |
Target: 5'- cGCCCc-CUggGGGCCGCUgguUCCGCGu -3' miRNA: 3'- aUGGGucGAgaCCCGGCGGu--AGGCGU- -5' |
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5195 | 3' | -62.4 | NC_001798.1 | + | 117029 | 0.66 | 0.607634 |
Target: 5'- -cCCCGGCcCUGGGggccaacuacuucuCCuCCAUCCGCc -3' miRNA: 3'- auGGGUCGaGACCC--------------GGcGGUAGGCGu -5' |
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5195 | 3' | -62.4 | NC_001798.1 | + | 40400 | 0.66 | 0.61062 |
Target: 5'- aGCauaCGGCaggUCUGGGuCCGCC-UUCGCGu -3' miRNA: 3'- aUGg--GUCG---AGACCC-GGCGGuAGGCGU- -5' |
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5195 | 3' | -62.4 | NC_001798.1 | + | 62816 | 0.66 | 0.61062 |
Target: 5'- gGCgCAGCUgUGGGCCcacgcGCCcccgcCCGCGu -3' miRNA: 3'- aUGgGUCGAgACCCGG-----CGGua---GGCGU- -5' |
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5195 | 3' | -62.4 | NC_001798.1 | + | 94720 | 0.66 | 0.580857 |
Target: 5'- aACCCgcaguGGUUCUGGaCCGCCcUCCaGCGc -3' miRNA: 3'- aUGGG-----UCGAGACCcGGCGGuAGG-CGU- -5' |
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5195 | 3' | -62.4 | NC_001798.1 | + | 53612 | 0.66 | 0.571981 |
Target: 5'- cGCCCcGUUCaagagcgGGGCCGCCGcggccaaguacgccgCCGCGg -3' miRNA: 3'- aUGGGuCGAGa------CCCGGCGGUa--------------GGCGU- -5' |
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5195 | 3' | -62.4 | NC_001798.1 | + | 51926 | 0.67 | 0.503435 |
Target: 5'- gGCCC-GUgg-GGGCCGCCG-CCGUg -3' miRNA: 3'- aUGGGuCGagaCCCGGCGGUaGGCGu -5' |
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5195 | 3' | -62.4 | NC_001798.1 | + | 42028 | 0.67 | 0.503435 |
Target: 5'- -cCCCGGCgUC-GGGCCGCaCAUCguaGCGg -3' miRNA: 3'- auGGGUCG-AGaCCCGGCG-GUAGg--CGU- -5' |
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5195 | 3' | -62.4 | NC_001798.1 | + | 39403 | 0.67 | 0.512894 |
Target: 5'- cGCCUuucGCUCcgggaccgGGGCgCgGCCGUCCGCGu -3' miRNA: 3'- aUGGGu--CGAGa-------CCCG-G-CGGUAGGCGU- -5' |
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5195 | 3' | -62.4 | NC_001798.1 | + | 26358 | 0.66 | 0.550432 |
Target: 5'- gGCCCGGCggagCUgcgcGGGCCGCgGcgggaguUCUGCGc -3' miRNA: 3'- aUGGGUCGa---GA----CCCGGCGgU-------AGGCGU- -5' |
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5195 | 3' | -62.4 | NC_001798.1 | + | 77698 | 0.66 | 0.551406 |
Target: 5'- cGCCCggggcagcagcgAGCgCUGGGCCGCCGgcgUCGa- -3' miRNA: 3'- aUGGG------------UCGaGACCCGGCGGUa--GGCgu -5' |
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5195 | 3' | -62.4 | NC_001798.1 | + | 122179 | 0.66 | 0.561178 |
Target: 5'- cACCCucguGC-CgGGGaCCGCCAagCCGCGa -3' miRNA: 3'- aUGGGu---CGaGaCCC-GGCGGUa-GGCGU- -5' |
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5195 | 3' | -62.4 | NC_001798.1 | + | 4742 | 0.66 | 0.561178 |
Target: 5'- -cCCCGGacgCcgGGGCCGCCucGUCgGCAu -3' miRNA: 3'- auGGGUCga-Ga-CCCGGCGG--UAGgCGU- -5' |
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5195 | 3' | -62.4 | NC_001798.1 | + | 115041 | 0.66 | 0.561178 |
Target: 5'- aGCCUGGaCgacgUGGGCCGCCAcCUGCu -3' miRNA: 3'- aUGGGUC-Gag--ACCCGGCGGUaGGCGu -5' |
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5195 | 3' | -62.4 | NC_001798.1 | + | 152362 | 0.66 | 0.561178 |
Target: 5'- -cUCCGGgUCUccuccucccgccGGGCCGCCGcUCCGUc -3' miRNA: 3'- auGGGUCgAGA------------CCCGGCGGU-AGGCGu -5' |
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5195 | 3' | -62.4 | NC_001798.1 | + | 58121 | 0.66 | 0.568047 |
Target: 5'- gGCCCGGCgUCUGGGUccuugugaaggcggCGCCGgagCCcaaGCAc -3' miRNA: 3'- aUGGGUCG-AGACCCG--------------GCGGUa--GG---CGU- -5' |
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5195 | 3' | -62.4 | NC_001798.1 | + | 105387 | 0.66 | 0.570013 |
Target: 5'- gGCCUggagggcGGCguUCUccaGGGCCGCCGcggCCGCGg -3' miRNA: 3'- aUGGG-------UCG--AGA---CCCGGCGGUa--GGCGU- -5' |
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5195 | 3' | -62.4 | NC_001798.1 | + | 69839 | 0.66 | 0.570997 |
Target: 5'- cACUUGG-UCcGGGCCGCCGUCgGCc -3' miRNA: 3'- aUGGGUCgAGaCCCGGCGGUAGgCGu -5' |
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5195 | 3' | -62.4 | NC_001798.1 | + | 76486 | 0.66 | 0.570997 |
Target: 5'- gGCgCAGCUCgGGGCUGgCCGaaCUGCAg -3' miRNA: 3'- aUGgGUCGAGaCCCGGC-GGUa-GGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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