miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5195 5' -60.4 NC_001798.1 + 175 0.66 0.664354
Target:  5'- -gCGCCGCgGGGcuGCCUUcccgcggGCGCCCc-- -3'
miRNA:   3'- uaGCGGCGaCCU--CGGAA-------CGCGGGuuu -5'
5195 5' -60.4 NC_001798.1 + 3759 0.67 0.613314
Target:  5'- cGUCGCCcaGCUcGGGcgcccacacgggcGCCgggGCGCCCGAGg -3'
miRNA:   3'- -UAGCGG--CGA-CCU-------------CGGaa-CGCGGGUUU- -5'
5195 5' -60.4 NC_001798.1 + 7908 0.71 0.37861
Target:  5'- uAUCGCCGC-GGcugcGCCcUGCGUCCAAAc -3'
miRNA:   3'- -UAGCGGCGaCCu---CGGaACGCGGGUUU- -5'
5195 5' -60.4 NC_001798.1 + 15533 0.69 0.494757
Target:  5'- -gCGCUGCUGGuGUUcgUGUGCCCGGc -3'
miRNA:   3'- uaGCGGCGACCuCGGa-ACGCGGGUUu -5'
5195 5' -60.4 NC_001798.1 + 24476 0.7 0.421134
Target:  5'- cUCGCCGCccugGGGcGCCUgagcgccGCGCCCGc- -3'
miRNA:   3'- uAGCGGCGa---CCU-CGGAa------CGCGGGUuu -5'
5195 5' -60.4 NC_001798.1 + 24887 0.67 0.614334
Target:  5'- cUgGUCGCcGGGGCCcUGgGCCCGGc -3'
miRNA:   3'- uAgCGGCGaCCUCGGaACgCGGGUUu -5'
5195 5' -60.4 NC_001798.1 + 24914 0.68 0.553593
Target:  5'- -cUGCCGC-GGAGCCc-GCGCCUg-- -3'
miRNA:   3'- uaGCGGCGaCCUCGGaaCGCGGGuuu -5'
5195 5' -60.4 NC_001798.1 + 25313 0.73 0.28222
Target:  5'- -cCGCCGCccUGGAgGCCUacUGCGCCCc-- -3'
miRNA:   3'- uaGCGGCG--ACCU-CGGA--ACGCGGGuuu -5'
5195 5' -60.4 NC_001798.1 + 26287 0.74 0.227597
Target:  5'- -gCGCgCGCUGGGGCCUggGCGCgCCGc- -3'
miRNA:   3'- uaGCG-GCGACCUCGGAa-CGCG-GGUuu -5'
5195 5' -60.4 NC_001798.1 + 27930 0.66 0.655185
Target:  5'- -cCGCCGCcGGGGUCccgGCGCCg--- -3'
miRNA:   3'- uaGCGGCGaCCUCGGaa-CGCGGguuu -5'
5195 5' -60.4 NC_001798.1 + 32318 0.69 0.494757
Target:  5'- -gCGCCGCgGGGGCCgaggaagUGUGCCa--- -3'
miRNA:   3'- uaGCGGCGaCCUCGGa------ACGCGGguuu -5'
5195 5' -60.4 NC_001798.1 + 35532 0.66 0.665372
Target:  5'- -cCGCCGCggccggcgcGGGGCgUUGCcgGCCCGGc -3'
miRNA:   3'- uaGCGGCGa--------CCUCGgAACG--CGGGUUu -5'
5195 5' -60.4 NC_001798.1 + 37166 0.67 0.593958
Target:  5'- -gCGCCGcCUGGcgGGCCgcucgGCGCgCCAGg -3'
miRNA:   3'- uaGCGGC-GACC--UCGGaa---CGCG-GGUUu -5'
5195 5' -60.4 NC_001798.1 + 37216 0.68 0.523859
Target:  5'- -gCGCgGCgccGGAGCUUUG-GCCCAGGg -3'
miRNA:   3'- uaGCGgCGa--CCUCGGAACgCGGGUUU- -5'
5195 5' -60.4 NC_001798.1 + 51535 0.68 0.514082
Target:  5'- aGUCGCCGCgugGGAcgaGUCcgUGCGCUCGGc -3'
miRNA:   3'- -UAGCGGCGa--CCU---CGGa-ACGCGGGUUu -5'
5195 5' -60.4 NC_001798.1 + 53835 0.66 0.675532
Target:  5'- uGUCGCCGcCUGGGccccgccgaucGCCgguucgugGCGCUCAGc -3'
miRNA:   3'- -UAGCGGC-GACCU-----------CGGaa------CGCGGGUUu -5'
5195 5' -60.4 NC_001798.1 + 56525 0.67 0.614334
Target:  5'- gAUCGUgGC-GGuGCCgggGCGCCCGc- -3'
miRNA:   3'- -UAGCGgCGaCCuCGGaa-CGCGGGUuu -5'
5195 5' -60.4 NC_001798.1 + 56709 0.66 0.665372
Target:  5'- -gUGCCGCUGGcGU--UGCGCCgAGAg -3'
miRNA:   3'- uaGCGGCGACCuCGgaACGCGGgUUU- -5'
5195 5' -60.4 NC_001798.1 + 60292 0.69 0.466412
Target:  5'- cUUGCCGUUGGGGCCga--GCUCGAAc -3'
miRNA:   3'- uAGCGGCGACCUCGGaacgCGGGUUU- -5'
5195 5' -60.4 NC_001798.1 + 62450 0.73 0.262936
Target:  5'- cGUCGCCGgUGG-GCCgcgcgacgGCGCCCGGu -3'
miRNA:   3'- -UAGCGGCgACCuCGGaa------CGCGGGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.