Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5195 | 5' | -60.4 | NC_001798.1 | + | 135788 | 0.67 | 0.573693 |
Target: 5'- -cCGCCGgaGGAgGCCgugUGCgcgGCCCGGGg -3' miRNA: 3'- uaGCGGCgaCCU-CGGa--ACG---CGGGUUU- -5' |
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5195 | 5' | -60.4 | NC_001798.1 | + | 138423 | 0.67 | 0.563619 |
Target: 5'- -gCGCuCGCUGucGCuCUUGCGCCCc-- -3' miRNA: 3'- uaGCG-GCGACcuCG-GAACGCGGGuuu -5' |
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5195 | 5' | -60.4 | NC_001798.1 | + | 135290 | 0.67 | 0.563619 |
Target: 5'- --gGCCGCccccucGGAGCCcUGgGCCCGGg -3' miRNA: 3'- uagCGGCGa-----CCUCGGaACgCGGGUUu -5' |
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5195 | 5' | -60.4 | NC_001798.1 | + | 24914 | 0.68 | 0.553593 |
Target: 5'- -cUGCCGC-GGAGCCc-GCGCCUg-- -3' miRNA: 3'- uaGCGGCGaCCUCGGaaCGCGGGuuu -5' |
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5195 | 5' | -60.4 | NC_001798.1 | + | 66817 | 0.68 | 0.52779 |
Target: 5'- -cCGUCGC-GGAGCCcggcccggugccgGCGCCCAGg -3' miRNA: 3'- uaGCGGCGaCCUCGGaa-----------CGCGGGUUu -5' |
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5195 | 5' | -60.4 | NC_001798.1 | + | 37216 | 0.68 | 0.523859 |
Target: 5'- -gCGCgGCgccGGAGCUUUG-GCCCAGGg -3' miRNA: 3'- uaGCGgCGa--CCUCGGAACgCGGGUUU- -5' |
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5195 | 5' | -60.4 | NC_001798.1 | + | 51535 | 0.68 | 0.514082 |
Target: 5'- aGUCGCCGCgugGGAcgaGUCcgUGCGCUCGGc -3' miRNA: 3'- -UAGCGGCGa--CCU---CGGa-ACGCGGGUUu -5' |
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5195 | 5' | -60.4 | NC_001798.1 | + | 152240 | 0.68 | 0.504379 |
Target: 5'- --gGCCGCUcGGGGCCggggucCGCCCGGGa -3' miRNA: 3'- uagCGGCGA-CCUCGGaac---GCGGGUUU- -5' |
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5195 | 5' | -60.4 | NC_001798.1 | + | 32318 | 0.69 | 0.494757 |
Target: 5'- -gCGCCGCgGGGGCCgaggaagUGUGCCa--- -3' miRNA: 3'- uaGCGGCGaCCUCGGa------ACGCGGguuu -5' |
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5195 | 5' | -60.4 | NC_001798.1 | + | 15533 | 0.69 | 0.494757 |
Target: 5'- -gCGCUGCUGGuGUUcgUGUGCCCGGc -3' miRNA: 3'- uaGCGGCGACCuCGGa-ACGCGGGUUu -5' |
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5195 | 5' | -60.4 | NC_001798.1 | + | 115305 | 0.69 | 0.475769 |
Target: 5'- uUCGCCGCgcacgccGGGGaCCUgGUGCCCGc- -3' miRNA: 3'- uAGCGGCGa------CCUC-GGAaCGCGGGUuu -5' |
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5195 | 5' | -60.4 | NC_001798.1 | + | 60292 | 0.69 | 0.466412 |
Target: 5'- cUUGCCGUUGGGGCCga--GCUCGAAc -3' miRNA: 3'- uAGCGGCGACCUCGGaacgCGGGUUU- -5' |
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5195 | 5' | -60.4 | NC_001798.1 | + | 102999 | 0.69 | 0.457151 |
Target: 5'- -aCGCCG--GGGGCCcaggUGCGCCCGGc -3' miRNA: 3'- uaGCGGCgaCCUCGGa---ACGCGGGUUu -5' |
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5195 | 5' | -60.4 | NC_001798.1 | + | 24476 | 0.7 | 0.421134 |
Target: 5'- cUCGCCGCccugGGGcGCCUgagcgccGCGCCCGc- -3' miRNA: 3'- uAGCGGCGa---CCU-CGGAa------CGCGGGUuu -5' |
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5195 | 5' | -60.4 | NC_001798.1 | + | 132142 | 0.71 | 0.386882 |
Target: 5'- -gCGCCGCcgGGGGCCggcgggcgggGCGCCCc-- -3' miRNA: 3'- uaGCGGCGa-CCUCGGaa--------CGCGGGuuu -5' |
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5195 | 5' | -60.4 | NC_001798.1 | + | 7908 | 0.71 | 0.37861 |
Target: 5'- uAUCGCCGC-GGcugcGCCcUGCGUCCAAAc -3' miRNA: 3'- -UAGCGGCGaCCu---CGGaACGCGGGUUU- -5' |
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5195 | 5' | -60.4 | NC_001798.1 | + | 25313 | 0.73 | 0.28222 |
Target: 5'- -cCGCCGCccUGGAgGCCUacUGCGCCCc-- -3' miRNA: 3'- uaGCGGCG--ACCU-CGGA--ACGCGGGuuu -5' |
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5195 | 5' | -60.4 | NC_001798.1 | + | 102641 | 0.73 | 0.27567 |
Target: 5'- cGUCGCCgggcgGCggaGGGGCCgggGCGCCCGAu -3' miRNA: 3'- -UAGCGG-----CGa--CCUCGGaa-CGCGGGUUu -5' |
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5195 | 5' | -60.4 | NC_001798.1 | + | 62450 | 0.73 | 0.262936 |
Target: 5'- cGUCGCCGgUGG-GCCgcgcgacgGCGCCCGGu -3' miRNA: 3'- -UAGCGGCgACCuCGGaa------CGCGGGUUu -5' |
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5195 | 5' | -60.4 | NC_001798.1 | + | 26287 | 0.74 | 0.227597 |
Target: 5'- -gCGCgCGCUGGGGCCUggGCGCgCCGc- -3' miRNA: 3'- uaGCG-GCGACCUCGGAa-CGCG-GGUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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