miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5196 5' -57.6 NC_001798.1 + 15554 0.66 0.846417
Target:  5'- cCGGCCccgGGcGUUGccgCCGCCGcgGCGGggAg -3'
miRNA:   3'- -GCCGG---UC-CAACa--GGCGGCa-CGUCaaU- -5'
5196 5' -57.6 NC_001798.1 + 125323 0.66 0.846417
Target:  5'- gGGCCAGGaacUCCagcuugGCCGUGUGGUc- -3'
miRNA:   3'- gCCGGUCCaacAGG------CGGCACGUCAau -5'
5196 5' -57.6 NC_001798.1 + 85297 0.66 0.830078
Target:  5'- gGGCCGGG--GUCCGCCc-GCGGc-- -3'
miRNA:   3'- gCCGGUCCaaCAGGCGGcaCGUCaau -5'
5196 5' -57.6 NC_001798.1 + 51924 0.66 0.830078
Target:  5'- gCGGCCcguGGggGccgCCGCCGUGCc---- -3'
miRNA:   3'- -GCCGGu--CCaaCa--GGCGGCACGucaau -5'
5196 5' -57.6 NC_001798.1 + 152217 0.66 0.821636
Target:  5'- cCGuGCCGGGg-GUCUGCCGcgGCGGc-- -3'
miRNA:   3'- -GC-CGGUCCaaCAGGCGGCa-CGUCaau -5'
5196 5' -57.6 NC_001798.1 + 135379 0.66 0.813023
Target:  5'- uCGGCgGGGUcaUGgCCGCCGUcugccuGCAGa-- -3'
miRNA:   3'- -GCCGgUCCA--ACaGGCGGCA------CGUCaau -5'
5196 5' -57.6 NC_001798.1 + 82271 0.67 0.803361
Target:  5'- aGGCCcGGUUGcCCcgagcgaGCCuuuGUGCGGUUGg -3'
miRNA:   3'- gCCGGuCCAACaGG-------CGG---CACGUCAAU- -5'
5196 5' -57.6 NC_001798.1 + 69142 0.67 0.786238
Target:  5'- uCGGCCAGucgcucgGUCUGCCGgccggGCGGa-- -3'
miRNA:   3'- -GCCGGUCcaa----CAGGCGGCa----CGUCaau -5'
5196 5' -57.6 NC_001798.1 + 94256 0.67 0.762014
Target:  5'- uGGCCcugagccagugccacGGGgUGUUCGCCGgGCAGUc- -3'
miRNA:   3'- gCCGG---------------UCCaACAGGCGGCaCGUCAau -5'
5196 5' -57.6 NC_001798.1 + 39122 0.67 0.758215
Target:  5'- gCGGCCcgcGGGUUGgCUGCgaaUGUGCGGUa- -3'
miRNA:   3'- -GCCGG---UCCAACaGGCG---GCACGUCAau -5'
5196 5' -57.6 NC_001798.1 + 36329 0.68 0.74864
Target:  5'- gGGCCGGGgcucgcugGUCCGCCGa--AGUa- -3'
miRNA:   3'- gCCGGUCCaa------CAGGCGGCacgUCAau -5'
5196 5' -57.6 NC_001798.1 + 76850 0.68 0.74864
Target:  5'- gGGCUaaAGGcgUGUCCgGCCGUGCuGg-- -3'
miRNA:   3'- gCCGG--UCCa-ACAGG-CGGCACGuCaau -5'
5196 5' -57.6 NC_001798.1 + 153719 0.68 0.719342
Target:  5'- gCGcGCCAGGUacUCCGUCGUGguGc-- -3'
miRNA:   3'- -GC-CGGUCCAacAGGCGGCACguCaau -5'
5196 5' -57.6 NC_001798.1 + 132283 0.69 0.67928
Target:  5'- -uGCCAGGU--UCUGCCG-GCAGUUu -3'
miRNA:   3'- gcCGGUCCAacAGGCGGCaCGUCAAu -5'
5196 5' -57.6 NC_001798.1 + 38228 0.69 0.658982
Target:  5'- gCGGCCAGGcacgcgggGUCCGUuuuggucgUGUGCAGg-- -3'
miRNA:   3'- -GCCGGUCCaa------CAGGCG--------GCACGUCaau -5'
5196 5' -57.6 NC_001798.1 + 82173 0.7 0.628395
Target:  5'- gCGGCCGcGGUU-UCCGCCGcagcggcgGCAGUg- -3'
miRNA:   3'- -GCCGGU-CCAAcAGGCGGCa-------CGUCAau -5'
5196 5' -57.6 NC_001798.1 + 25925 0.7 0.618195
Target:  5'- uGGCCugcgAGGUgcUGcCCGCCG-GCAGUg- -3'
miRNA:   3'- gCCGG----UCCA--ACaGGCGGCaCGUCAau -5'
5196 5' -57.6 NC_001798.1 + 31665 0.71 0.577571
Target:  5'- gCGGCCGGGcccgcgccGcCCGCCGUGcCGGUg- -3'
miRNA:   3'- -GCCGGUCCaa------CaGGCGGCAC-GUCAau -5'
5196 5' -57.6 NC_001798.1 + 113951 0.73 0.460851
Target:  5'- gCGGCCcguGGGUUguuagucgcGUCCGCCG-GCGGUg- -3'
miRNA:   3'- -GCCGG---UCCAA---------CAGGCGGCaCGUCAau -5'
5196 5' -57.6 NC_001798.1 + 139426 0.73 0.451663
Target:  5'- gGGCCAGac---CCGCCGUGCGGUUc -3'
miRNA:   3'- gCCGGUCcaacaGGCGGCACGUCAAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.