Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5197 | 3' | -52.3 | NC_001798.1 | + | 27017 | 0.66 | 0.98546 |
Target: 5'- gGGGGUCgGGcgGGCGGGGg---UCGGg -3' miRNA: 3'- -CUCUAGaCCuaCUGCUCCagaaGGCC- -5' |
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5197 | 3' | -52.3 | NC_001798.1 | + | 26808 | 0.66 | 0.98546 |
Target: 5'- gGGGGUCgGGcgGGCGGGGg---UCGGg -3' miRNA: 3'- -CUCUAGaCCuaCUGCUCCagaaGGCC- -5' |
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5197 | 3' | -52.3 | NC_001798.1 | + | 26838 | 0.66 | 0.98546 |
Target: 5'- gGGGGUCgGGcgGGCGGGGg---UCGGg -3' miRNA: 3'- -CUCUAGaCCuaCUGCUCCagaaGGCC- -5' |
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5197 | 3' | -52.3 | NC_001798.1 | + | 26868 | 0.66 | 0.98546 |
Target: 5'- gGGGGUCgGGcgGGCGGGGg---UCGGg -3' miRNA: 3'- -CUCUAGaCCuaCUGCUCCagaaGGCC- -5' |
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5197 | 3' | -52.3 | NC_001798.1 | + | 26898 | 0.66 | 0.98546 |
Target: 5'- gGGGGUCgGGcgGGCGGGGg---UCGGg -3' miRNA: 3'- -CUCUAGaCCuaCUGCUCCagaaGGCC- -5' |
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5197 | 3' | -52.3 | NC_001798.1 | + | 26957 | 0.66 | 0.98546 |
Target: 5'- gGGGGUCgGGcgGGCGGGGg---UCGGg -3' miRNA: 3'- -CUCUAGaCCuaCUGCUCCagaaGGCC- -5' |
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5197 | 3' | -52.3 | NC_001798.1 | + | 26987 | 0.66 | 0.98546 |
Target: 5'- gGGGGUCgGGcgGGCGGGGg---UCGGg -3' miRNA: 3'- -CUCUAGaCCuaCUGCUCCagaaGGCC- -5' |
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5197 | 3' | -52.3 | NC_001798.1 | + | 92679 | 0.67 | 0.979503 |
Target: 5'- --uAUCUGG-UGAUcacgGAGGgCUUCCGGg -3' miRNA: 3'- cucUAGACCuACUG----CUCCaGAAGGCC- -5' |
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5197 | 3' | -52.3 | NC_001798.1 | + | 38932 | 0.67 | 0.974629 |
Target: 5'- gGGGcgCaGGcgcGUGGCGAGGUUUUCCa- -3' miRNA: 3'- -CUCuaGaCC---UACUGCUCCAGAAGGcc -5' |
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5197 | 3' | -52.3 | NC_001798.1 | + | 40123 | 0.68 | 0.950986 |
Target: 5'- uAGGUCgccggggcugGGAUGGCGGGuGUCcUCCGa -3' miRNA: 3'- cUCUAGa---------CCUACUGCUC-CAGaAGGCc -5' |
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5197 | 3' | -52.3 | NC_001798.1 | + | 26627 | 0.68 | 0.950986 |
Target: 5'- cGGAcugUUUGGGgagUGACGGGGggggaaaCUUCCGGg -3' miRNA: 3'- cUCU---AGACCU---ACUGCUCCa------GAAGGCC- -5' |
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5197 | 3' | -52.3 | NC_001798.1 | + | 144585 | 0.69 | 0.937393 |
Target: 5'- cGGGcggCUGGGUGGCGAGGggCUUCg-- -3' miRNA: 3'- -CUCua-GACCUACUGCUCCa-GAAGgcc -5' |
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5197 | 3' | -52.3 | NC_001798.1 | + | 115153 | 0.69 | 0.937393 |
Target: 5'- cGGAUCUGGuggccauaGGCGAcaggcuGGUCUUCCuGGa -3' miRNA: 3'- cUCUAGACCua------CUGCU------CCAGAAGG-CC- -5' |
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5197 | 3' | -52.3 | NC_001798.1 | + | 45920 | 0.69 | 0.932376 |
Target: 5'- cGGGUCUcgGGggGugGcGGUCgcgUCCGGa -3' miRNA: 3'- cUCUAGA--CCuaCugCuCCAGa--AGGCC- -5' |
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5197 | 3' | -52.3 | NC_001798.1 | + | 22752 | 0.7 | 0.890408 |
Target: 5'- cGAGGUCgcgaUGGcgGACGAGGacgggggacgUCU-CCGGg -3' miRNA: 3'- -CUCUAG----ACCuaCUGCUCC----------AGAaGGCC- -5' |
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5197 | 3' | -52.3 | NC_001798.1 | + | 12798 | 0.7 | 0.890408 |
Target: 5'- cGGGAUCcucuaagagGGccGAguccuCGGGGUCUUCCGGa -3' miRNA: 3'- -CUCUAGa--------CCuaCU-----GCUCCAGAAGGCC- -5' |
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5197 | 3' | -52.3 | NC_001798.1 | + | 135157 | 0.71 | 0.876273 |
Target: 5'- -cGGUCUGGAcGGCGcGGUUUuguuucUCCGGg -3' miRNA: 3'- cuCUAGACCUaCUGCuCCAGA------AGGCC- -5' |
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5197 | 3' | -52.3 | NC_001798.1 | + | 26928 | 0.73 | 0.802306 |
Target: 5'- gGGGGUCgGGcgGGCGGGGUCgggCGGg -3' miRNA: 3'- -CUCUAGaCCuaCUGCUCCAGaagGCC- -5' |
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5197 | 3' | -52.3 | NC_001798.1 | + | 90205 | 1.12 | 0.005115 |
Target: 5'- gGAGAUCUGGAUGACGAGGUCUUCCGGg -3' miRNA: 3'- -CUCUAGACCUACUGCUCCAGAAGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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