Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 68780 | 0.66 | 0.835338 |
Target: 5'- -cCCGGGu-GGCCGGUgugUGUggCCUCCUg -3' miRNA: 3'- cuGGCCUuuCCGGUCGa--GCA--GGAGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 67563 | 0.68 | 0.746525 |
Target: 5'- cGCCaGGggGGGCgAcCUCGggCUCCCg -3' miRNA: 3'- cUGG-CCuuUCCGgUcGAGCagGAGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 66883 | 0.67 | 0.801518 |
Target: 5'- gGGCUugGGAAAGGCCacgggggcggGGC-CGUCgCUCCa -3' miRNA: 3'- -CUGG--CCUUUCCGG----------UCGaGCAG-GAGGg -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 62453 | 0.73 | 0.444698 |
Target: 5'- cGCCGGu-GGGCCGcGCgacggcgcccggUCGUCCUCCUc -3' miRNA: 3'- cUGGCCuuUCCGGU-CG------------AGCAGGAGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 57565 | 0.67 | 0.78369 |
Target: 5'- gGACgCGGAGGGGgCGGCauugcucgCGUUCcCCCg -3' miRNA: 3'- -CUG-GCCUUUCCgGUCGa-------GCAGGaGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 55981 | 0.67 | 0.755983 |
Target: 5'- cGCCGGGGAGGCCgcgggggcgaggGGCUgGUaggcgggUCCCg -3' miRNA: 3'- cUGGCCUUUCCGG------------UCGAgCAgg-----AGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 52981 | 0.66 | 0.819601 |
Target: 5'- cGACCGGGcuGGgCGGCcCGccacgcccauaggcgCCUCCCc -3' miRNA: 3'- -CUGGCCUuuCCgGUCGaGCa--------------GGAGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 51848 | 0.66 | 0.835338 |
Target: 5'- cACaCGGAGGGGCgCGGCUCGgagCUCg- -3' miRNA: 3'- cUG-GCCUUUCCG-GUCGAGCag-GAGgg -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 50042 | 0.75 | 0.3379 |
Target: 5'- --aCGGAucgacaaucgAGGGCCuGCUCGaCCUCCCg -3' miRNA: 3'- cugGCCU----------UUCCGGuCGAGCaGGAGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 48397 | 0.67 | 0.78369 |
Target: 5'- cGACCGcacGGGCCcccgcccGCUCGgCUUCCCg -3' miRNA: 3'- -CUGGCcuuUCCGGu------CGAGCaGGAGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 47072 | 0.7 | 0.617899 |
Target: 5'- uGCCGGGGcgacAGcGCCGGUguggUGUCCgUCCCg -3' miRNA: 3'- cUGGCCUU----UC-CGGUCGa---GCAGG-AGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 46405 | 0.66 | 0.835338 |
Target: 5'- uGGCCGGcAGGGCCA-C-CGcCCcCCCg -3' miRNA: 3'- -CUGGCCuUUCCGGUcGaGCaGGaGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 41391 | 0.69 | 0.697957 |
Target: 5'- uGGCCGGGAGGGacaCGGCcCGaCCUUCg -3' miRNA: 3'- -CUGGCCUUUCCg--GUCGaGCaGGAGGg -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 40281 | 0.7 | 0.607858 |
Target: 5'- cGACCGG---GGCCGGCUuucCGaaacUCCUCCUu -3' miRNA: 3'- -CUGGCCuuuCCGGUCGA---GC----AGGAGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 40133 | 0.67 | 0.755983 |
Target: 5'- gGGCUGGGAuGGCgGGU--GUCCUCCg -3' miRNA: 3'- -CUGGCCUUuCCGgUCGagCAGGAGGg -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 38429 | 0.67 | 0.755983 |
Target: 5'- gGGCCGGGccGGGGCCccacauuuauccGGUgggucaUCGcccUCCUCCCa -3' miRNA: 3'- -CUGGCCU--UUCCGG------------UCG------AGC---AGGAGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 37403 | 0.66 | 0.835338 |
Target: 5'- cACCGGGcggguccguGGGGCCGGC-CGaCCaacCCCg -3' miRNA: 3'- cUGGCCU---------UUCCGGUCGaGCaGGa--GGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 37271 | 0.66 | 0.810215 |
Target: 5'- uACCGGAAacuaugauugGGGCCcacccuGGCgugggaggCGaCCUCCCg -3' miRNA: 3'- cUGGCCUU----------UCCGG------UCGa-------GCaGGAGGG- -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 36323 | 0.69 | 0.648053 |
Target: 5'- gGGCCGGGgccGGGGCUcGCUgGUCCgCCg -3' miRNA: 3'- -CUGGCCU---UUCCGGuCGAgCAGGaGGg -5' |
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5197 | 5' | -58.1 | NC_001798.1 | + | 36110 | 0.67 | 0.792674 |
Target: 5'- ---gGGggGGGcCCGGCUgCGUCUcgccgcgaUCCCg -3' miRNA: 3'- cuggCCuuUCC-GGUCGA-GCAGG--------AGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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