Results 61 - 74 of 74 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 38429 | 0.67 | 0.755983 |
Target: 5'- gGGCCGGGccGGGGCCccacauuuauccGGUgggucaUCGcccUCCUCCCa -3' miRNA: 3'- -CUGGCCU--UUCCGG------------UCG------AGC---AGGAGGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 13545 | 0.67 | 0.765336 |
Target: 5'- -cCCGGggGGGUcgguCAGCUgGUCCaaaaCCg -3' miRNA: 3'- cuGGCCuuUCCG----GUCGAgCAGGag--GG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 111589 | 0.67 | 0.765336 |
Target: 5'- uGAgCGGggGGcCCGGCggggCGgCCUCCUg -3' miRNA: 3'- -CUgGCCuuUCcGGUCGa---GCaGGAGGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 86448 | 0.67 | 0.765336 |
Target: 5'- -cCCGGGgacgGGGGCCGGUUCGUgagCCUgCUu -3' miRNA: 3'- cuGGCCU----UUCCGGUCGAGCA---GGAgGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 57565 | 0.67 | 0.78369 |
Target: 5'- gGACgCGGAGGGGgCGGCauugcucgCGUUCcCCCg -3' miRNA: 3'- -CUG-GCCUUUCCgGUCGa-------GCAGGaGGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 152094 | 0.67 | 0.78369 |
Target: 5'- gGGCCGG--GGGUCGGCcccgucaagCGUCCccgCCCc -3' miRNA: 3'- -CUGGCCuuUCCGGUCGa--------GCAGGa--GGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 48397 | 0.67 | 0.78369 |
Target: 5'- cGACCGcacGGGCCcccgcccGCUCGgCUUCCCg -3' miRNA: 3'- -CUGGCcuuUCCGGu------CGAGCaGGAGGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 127947 | 0.67 | 0.78369 |
Target: 5'- -cCCGGGcgaaAAGGcCCGGCccgCGUCCccggCCCu -3' miRNA: 3'- cuGGCCU----UUCC-GGUCGa--GCAGGa---GGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 36110 | 0.67 | 0.792674 |
Target: 5'- ---gGGggGGGcCCGGCUgCGUCUcgccgcgaUCCCg -3' miRNA: 3'- cuggCCuuUCC-GGUCGA-GCAGG--------AGGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 1714 | 0.67 | 0.801518 |
Target: 5'- cGGCCGGA--GGCCAGCacggugCGgcgCaggUCCCg -3' miRNA: 3'- -CUGGCCUuuCCGGUCGa-----GCa--Gg--AGGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 66883 | 0.67 | 0.801518 |
Target: 5'- gGGCUugGGAAAGGCCacgggggcggGGC-CGUCgCUCCa -3' miRNA: 3'- -CUGG--CCUUUCCGG----------UCGaGCAG-GAGGg -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 139370 | 0.67 | 0.801518 |
Target: 5'- cGGCgGGGAGGGCUcGCgggaCGUCCgggCaCCa -3' miRNA: 3'- -CUGgCCUUUCCGGuCGa---GCAGGa--G-GG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 37271 | 0.66 | 0.810215 |
Target: 5'- uACCGGAAacuaugauugGGGCCcacccuGGCgugggaggCGaCCUCCCg -3' miRNA: 3'- cUGGCCUU----------UCCGG------UCGa-------GCaGGAGGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 124330 | 0.66 | 0.851208 |
Target: 5'- gGGCCGGGAcGGCgCGGaaagCGUCauccgCCCg -3' miRNA: 3'- -CUGGCCUUuCCG-GUCga--GCAGga---GGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home