miRNA: 3'- uAGAggCAGUCGaACCAG-------UCCUGCUU- -5'
miRNA: 3'- -UAGAGg---CAGUCGa-------ACCAGUCCUgCUU- -5'
miRNA: 3'- -UAGAGGCAGUCGAACCAGUCCUGCUU- -5'
Results 1 - 3 of 3 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 5198 | 5' | -55.2 | NC_001798.1 | + | 74543 | 0.7 | 0.702477 |
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Target: 5'- cUCUuuGUCGGUgUGGUCcccagggGGGACGGAg -3' miRNA: 3'- uAGAggCAGUCGaACCAG-------UCCUGCUU- -5' |
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| 5198 | 5' | -55.2 | NC_001798.1 | + | 104987 | 0.71 | 0.641157 |
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Target: 5'- cGUCUCgaaaGUCGGCgcugcgggUGGUCAGGGgGAAg -3' miRNA: 3'- -UAGAGg---CAGUCGa-------ACCAGUCCUgCUU- -5' |
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| 5198 | 5' | -55.2 | NC_001798.1 | + | 89944 | 1.04 | 0.00559 |
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Target: 5'- gAUCUCCGUCAGCUUGGUCAGGACGAAg -3' miRNA: 3'- -UAGAGGCAGUCGAACCAGUCCUGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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