miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5199 5' -52 NC_001798.1 + 88488 0.66 0.985309
Target:  5'- cGCGCaguuGUuuuUGCGCACCAgauccacgcCCUUGAUGa -3'
miRNA:   3'- -UGUGgcu-CA---ACGUGUGGU---------GGAACUAC- -5'
5199 5' -52 NC_001798.1 + 141463 0.66 0.984208
Target:  5'- gGCugCGAGcUGCugACCGgCUcgccgcgcggggggcUGAUGu -3'
miRNA:   3'- -UGugGCUCaACGugUGGUgGA---------------ACUAC- -5'
5199 5' -52 NC_001798.1 + 26290 0.66 0.98344
Target:  5'- cGCGCUGGGgccuggGCGCGCCGCUgcGGc- -3'
miRNA:   3'- -UGUGGCUCaa----CGUGUGGUGGaaCUac -5'
5199 5' -52 NC_001798.1 + 24461 0.66 0.981398
Target:  5'- gGCGCCGcGGgggUGCuCGCCGCCcUGGg- -3'
miRNA:   3'- -UGUGGC-UCa--ACGuGUGGUGGaACUac -5'
5199 5' -52 NC_001798.1 + 56289 0.66 0.979403
Target:  5'- cGCACCGAGgaggcgugggugagGUACACUACCgcGGUc -3'
miRNA:   3'- -UGUGGCUCaa------------CGUGUGGUGGaaCUAc -5'
5199 5' -52 NC_001798.1 + 121121 0.66 0.976754
Target:  5'- gGCACCGGGaaggGCucGCACCGCCg----- -3'
miRNA:   3'- -UGUGGCUCaa--CG--UGUGGUGGaacuac -5'
5199 5' -52 NC_001798.1 + 29291 0.67 0.971312
Target:  5'- cACGCaGAGccucGCGCGCCGCCgggugGGUGg -3'
miRNA:   3'- -UGUGgCUCaa--CGUGUGGUGGaa---CUAC- -5'
5199 5' -52 NC_001798.1 + 138621 0.67 0.971312
Target:  5'- -gACCGGGUcGCGCACCAgccacuccccCCggcGAUGg -3'
miRNA:   3'- ugUGGCUCAaCGUGUGGU----------GGaa-CUAC- -5'
5199 5' -52 NC_001798.1 + 16377 0.67 0.971312
Target:  5'- gUACCGGGUcggagGCcCGCCGCCcUGGUa -3'
miRNA:   3'- uGUGGCUCAa----CGuGUGGUGGaACUAc -5'
5199 5' -52 NC_001798.1 + 38144 0.67 0.969207
Target:  5'- uGCugCGAGUccuUGUACACCGCaaagaaaaaacagugGAUGg -3'
miRNA:   3'- -UGugGCUCA---ACGUGUGGUGgaa------------CUAC- -5'
5199 5' -52 NC_001798.1 + 134929 0.67 0.968271
Target:  5'- cCGCCGAGUcgGCGCGugACCU-GGUGc -3'
miRNA:   3'- uGUGGCUCAa-CGUGUggUGGAaCUAC- -5'
5199 5' -52 NC_001798.1 + 61208 0.67 0.965009
Target:  5'- cGCGCCGgcGGUUGCACcaauCCGCaCguaGAUGg -3'
miRNA:   3'- -UGUGGC--UCAACGUGu---GGUG-Gaa-CUAC- -5'
5199 5' -52 NC_001798.1 + 77762 0.69 0.935495
Target:  5'- cGCGCCGAGUUcgacguggucgaGCuGCGCCGCCUg---- -3'
miRNA:   3'- -UGUGGCUCAA------------CG-UGUGGUGGAacuac -5'
5199 5' -52 NC_001798.1 + 52375 0.69 0.935495
Target:  5'- gACACCGcg--GCGCGCCGCCUg---- -3'
miRNA:   3'- -UGUGGCucaaCGUGUGGUGGAacuac -5'
5199 5' -52 NC_001798.1 + 128026 0.69 0.93028
Target:  5'- uCGCCGGGggGCGCACaCGCCa----- -3'
miRNA:   3'- uGUGGCUCaaCGUGUG-GUGGaacuac -5'
5199 5' -52 NC_001798.1 + 70559 0.69 0.93028
Target:  5'- cCGCCGGGcUGCGCACCACg------ -3'
miRNA:   3'- uGUGGCUCaACGUGUGGUGgaacuac -5'
5199 5' -52 NC_001798.1 + 53895 0.7 0.886663
Target:  5'- cCGCgGAGacguUUGCGCGCCACCUgGAc- -3'
miRNA:   3'- uGUGgCUC----AACGUGUGGUGGAaCUac -5'
5199 5' -52 NC_001798.1 + 4358 0.7 0.879442
Target:  5'- aGCGCCGgcgGGggGCGCGCCGgCggcggUGGUGg -3'
miRNA:   3'- -UGUGGC---UCaaCGUGUGGUgGa----ACUAC- -5'
5199 5' -52 NC_001798.1 + 99245 0.71 0.848263
Target:  5'- -aGCCGGGggugGCACACCACCg----- -3'
miRNA:   3'- ugUGGCUCaa--CGUGUGGUGGaacuac -5'
5199 5' -52 NC_001798.1 + 109606 0.72 0.821772
Target:  5'- uACGCCGAGUUucucggcggccgcGCGCuaACCGCCccGAUGg -3'
miRNA:   3'- -UGUGGCUCAA-------------CGUG--UGGUGGaaCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.