miRNA display CGI


Results 41 - 60 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5200 5' -49.6 NC_001798.1 + 114579 0.66 0.996815
Target:  5'- gGGGGCguuugagCGCGGCACGGc-CGAccAGAUGc -3'
miRNA:   3'- aCUCCG-------GCGCCGUGUUuuGCU--UUUAC- -5'
5200 5' -49.6 NC_001798.1 + 113129 0.73 0.866274
Target:  5'- cGAGGCCGCguguGGCGgGgaGGACGGAGAa- -3'
miRNA:   3'- aCUCCGGCG----CCGUgU--UUUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 112509 0.67 0.994081
Target:  5'- --uGGCgGUGGCGC-GAACGGGAcccGUGg -3'
miRNA:   3'- acuCCGgCGCCGUGuUUUGCUUU---UAC- -5'
5200 5' -49.6 NC_001798.1 + 111830 0.76 0.767408
Target:  5'- aGGGGCU--GGCGCGGGGCGGGAAUGc -3'
miRNA:   3'- aCUCCGGcgCCGUGUUUUGCUUUUAC- -5'
5200 5' -49.6 NC_001798.1 + 111302 0.67 0.992079
Target:  5'- -cAGGCCGUGGCGCugGAUGu----- -3'
miRNA:   3'- acUCCGGCGCCGUGuuUUGCuuuuac -5'
5200 5' -49.6 NC_001798.1 + 111014 0.68 0.982742
Target:  5'- cGuGGCCGCGGC-CA-GGCGuccGUGg -3'
miRNA:   3'- aCuCCGGCGCCGuGUuUUGCuuuUAC- -5'
5200 5' -49.6 NC_001798.1 + 108690 0.66 0.996538
Target:  5'- cGGGGCCGCccgcggggacaccgaGGCAUccGACGAcGAa- -3'
miRNA:   3'- aCUCCGGCG---------------CCGUGuuUUGCUuUUac -5'
5200 5' -49.6 NC_001798.1 + 104602 0.66 0.997666
Target:  5'- cGGGGCCGCcgguagcaccccguGGCGCAccaacguGGCGAucacgacguGGGUGg -3'
miRNA:   3'- aCUCCGGCG--------------CCGUGUu------UUGCU---------UUUAC- -5'
5200 5' -49.6 NC_001798.1 + 104518 0.66 0.997788
Target:  5'- cGcGGCgGCGGCGCGGuuGACGucgucgcGGUGg -3'
miRNA:   3'- aCuCCGgCGCCGUGUU--UUGCuu-----UUAC- -5'
5200 5' -49.6 NC_001798.1 + 102657 0.75 0.786971
Target:  5'- aGGGGCCGgGGCGCccgaugccGAAACGggGu-- -3'
miRNA:   3'- aCUCCGGCgCCGUG--------UUUUGCuuUuac -5'
5200 5' -49.6 NC_001798.1 + 102186 0.67 0.992833
Target:  5'- gUGGGGCCcggaagccuggcgcGCGGCGCGc--CGGGAGUc -3'
miRNA:   3'- -ACUCCGG--------------CGCCGUGUuuuGCUUUUAc -5'
5200 5' -49.6 NC_001798.1 + 100753 0.68 0.984701
Target:  5'- uUGGGGCgCGCGGUcgGCAAGguagucAUGGGAGUa -3'
miRNA:   3'- -ACUCCG-GCGCCG--UGUUU------UGCUUUUAc -5'
5200 5' -49.6 NC_001798.1 + 99225 0.67 0.994917
Target:  5'- cGaAGGUCGCcacgcGCACGAGcCGggGGUGg -3'
miRNA:   3'- aC-UCCGGCGc----CGUGUUUuGCuuUUAC- -5'
5200 5' -49.6 NC_001798.1 + 97712 0.69 0.970019
Target:  5'- cGGGcGCUGCGuGCGCGAGcagcGCGggGAg- -3'
miRNA:   3'- aCUC-CGGCGC-CGUGUUU----UGCuuUUac -5'
5200 5' -49.6 NC_001798.1 + 97543 0.7 0.96683
Target:  5'- gGAGG-CGUGGCGCGgggacgcccgcGAGCGAGGAc- -3'
miRNA:   3'- aCUCCgGCGCCGUGU-----------UUUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 97475 0.74 0.824171
Target:  5'- gGGGGCCgGCGGCGCGAc-CGggGGg- -3'
miRNA:   3'- aCUCCGG-CGCCGUGUUuuGCuuUUac -5'
5200 5' -49.6 NC_001798.1 + 97284 0.68 0.989572
Target:  5'- gGGGGCCaccugGCGGCGCuGGACau-GGUGg -3'
miRNA:   3'- aCUCCGG-----CGCCGUGuUUUGcuuUUAC- -5'
5200 5' -49.6 NC_001798.1 + 95027 0.69 0.972983
Target:  5'- gGAGGCCGgGGCcCGc-GCGcuGAUGg -3'
miRNA:   3'- aCUCCGGCgCCGuGUuuUGCuuUUAC- -5'
5200 5' -49.6 NC_001798.1 + 94566 0.68 0.988107
Target:  5'- cGAGGCCGCcaaGGCGCGGGuCGc----- -3'
miRNA:   3'- aCUCCGGCG---CCGUGUUUuGCuuuuac -5'
5200 5' -49.6 NC_001798.1 + 92399 0.66 0.995655
Target:  5'- cGuGGCCGCGGUcgucgggucccGCAcGACGGGc--- -3'
miRNA:   3'- aCuCCGGCGCCG-----------UGUuUUGCUUuuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.