miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5201 3' -60.5 NC_001798.1 + 117112 0.66 0.695129
Target:  5'- -gCGCUGaCCUACGcGcucaUGGCGGGGUACu -3'
miRNA:   3'- aaGCGGC-GGGUGCaC----ACCGUCUCGUG- -5'
5201 3' -60.5 NC_001798.1 + 2990 0.66 0.695129
Target:  5'- --gGCCgGCCCGCGggccccgGGCgcgGGGGCGCg -3'
miRNA:   3'- aagCGG-CGGGUGCaca----CCG---UCUCGUG- -5'
5201 3' -60.5 NC_001798.1 + 149691 0.66 0.694134
Target:  5'- --gGCCGCCCuCGcGUGGCGcGucuuccuGGCACa -3'
miRNA:   3'- aagCGGCGGGuGCaCACCGU-C-------UCGUG- -5'
5201 3' -60.5 NC_001798.1 + 21937 0.66 0.694134
Target:  5'- -cUGCgGCCC-CGcccccuuUG-GGCGGAGCGCg -3'
miRNA:   3'- aaGCGgCGGGuGC-------ACaCCGUCUCGUG- -5'
5201 3' -60.5 NC_001798.1 + 153014 0.66 0.692143
Target:  5'- gUCGCCggggcggaguccggGCCCGCGc--GGCGGcGCGCg -3'
miRNA:   3'- aAGCGG--------------CGGGUGCacaCCGUCuCGUG- -5'
5201 3' -60.5 NC_001798.1 + 30873 0.66 0.685158
Target:  5'- -cUGUCGCCCACccccccGUGGCccGGCACg -3'
miRNA:   3'- aaGCGGCGGGUGca----CACCGucUCGUG- -5'
5201 3' -60.5 NC_001798.1 + 36247 0.66 0.685158
Target:  5'- -cUGCCGCCCGCGcgcuccugUGUGGacccCGGGGUggGCg -3'
miRNA:   3'- aaGCGGCGGGUGC--------ACACC----GUCUCG--UG- -5'
5201 3' -60.5 NC_001798.1 + 113644 0.66 0.685158
Target:  5'- -gCGCCG-CCAUGUggGUGGCGGcGGCGg -3'
miRNA:   3'- aaGCGGCgGGUGCA--CACCGUC-UCGUg -5'
5201 3' -60.5 NC_001798.1 + 25936 0.66 0.675145
Target:  5'- -gUGCUGCCCGCc---GGCAGuGCGCc -3'
miRNA:   3'- aaGCGGCGGGUGcacaCCGUCuCGUG- -5'
5201 3' -60.5 NC_001798.1 + 22260 0.66 0.673138
Target:  5'- --aGCCGCCCGCGccgggcgcuaaUGagaugccgcgcgGGCGGAGCGg -3'
miRNA:   3'- aagCGGCGGGUGC-----------ACa-----------CCGUCUCGUg -5'
5201 3' -60.5 NC_001798.1 + 35326 0.66 0.665098
Target:  5'- -aCGgCGCCCGCaacc-GCAGAGCACu -3'
miRNA:   3'- aaGCgGCGGGUGcacacCGUCUCGUG- -5'
5201 3' -60.5 NC_001798.1 + 16214 0.66 0.665098
Target:  5'- -cCGCaCGCgCCGCcUGUGGgGGGGCGg -3'
miRNA:   3'- aaGCG-GCG-GGUGcACACCgUCUCGUg -5'
5201 3' -60.5 NC_001798.1 + 10577 0.66 0.665098
Target:  5'- cUCGUCGCCCGCGg--GGaaCGGGGgACu -3'
miRNA:   3'- aAGCGGCGGGUGCacaCC--GUCUCgUG- -5'
5201 3' -60.5 NC_001798.1 + 127145 0.66 0.659056
Target:  5'- -cCGCCGCCCugaccACG-GccaacuuucacacucUGGUGGGGCACg -3'
miRNA:   3'- aaGCGGCGGG-----UGCaC---------------ACCGUCUCGUG- -5'
5201 3' -60.5 NC_001798.1 + 26344 0.66 0.655024
Target:  5'- -aCGCCGUgCGCGgcgGcccGGCGGAGCuGCg -3'
miRNA:   3'- aaGCGGCGgGUGCa--Ca--CCGUCUCG-UG- -5'
5201 3' -60.5 NC_001798.1 + 11587 0.66 0.655024
Target:  5'- aUUCGCUGgCCgaucGCGUGgaauugGGCGGGGCu- -3'
miRNA:   3'- -AAGCGGCgGG----UGCACa-----CCGUCUCGug -5'
5201 3' -60.5 NC_001798.1 + 2619 0.66 0.655024
Target:  5'- -gCGCCGCCCgGCGgcgcccUGgccggGGCGGGGCu- -3'
miRNA:   3'- aaGCGGCGGG-UGC------ACa----CCGUCUCGug -5'
5201 3' -60.5 NC_001798.1 + 2967 0.66 0.655024
Target:  5'- --gGCgCGUCgGCGUGcGGCGGGGCGg -3'
miRNA:   3'- aagCG-GCGGgUGCACaCCGUCUCGUg -5'
5201 3' -60.5 NC_001798.1 + 54004 0.66 0.654016
Target:  5'- -gCGCCugGCCCACcUGUGGgAGAccggcaaGCGCa -3'
miRNA:   3'- aaGCGG--CGGGUGcACACCgUCU-------CGUG- -5'
5201 3' -60.5 NC_001798.1 + 11624 0.66 0.644933
Target:  5'- cUCGCCGCUCGCG---GGCGcGGGCGu -3'
miRNA:   3'- aAGCGGCGGGUGCacaCCGU-CUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.