miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5202 5' -60.4 NC_001798.1 + 153420 0.66 0.73513
Target:  5'- ---cGcGCCcaggACCCCCgucgggccagGCGCgCGGCCGUCu -3'
miRNA:   3'- caaaC-CGG----UGGGGG----------CGCG-GCUGGUAG- -5'
5202 5' -60.4 NC_001798.1 + 138414 0.66 0.73513
Target:  5'- ----aGCCA-CCCCGCGCUcGCUGUCg -3'
miRNA:   3'- caaacCGGUgGGGGCGCGGcUGGUAG- -5'
5202 5' -60.4 NC_001798.1 + 77936 0.66 0.73513
Target:  5'- ---aGcGCCAccccaugcucCCCCCGCucGCCG-CCAUCc -3'
miRNA:   3'- caaaC-CGGU----------GGGGGCG--CGGCuGGUAG- -5'
5202 5' -60.4 NC_001798.1 + 61892 0.66 0.73513
Target:  5'- ---gGGCgCGCCCUCGaaGCCGGCCc-- -3'
miRNA:   3'- caaaCCG-GUGGGGGCg-CGGCUGGuag -5'
5202 5' -60.4 NC_001798.1 + 25310 0.66 0.73513
Target:  5'- ---cGGCCGCCgCCCuggaggccuacuGCGCCccgcgGGCCGUg -3'
miRNA:   3'- caaaCCGGUGG-GGG------------CGCGG-----CUGGUAg -5'
5202 5' -60.4 NC_001798.1 + 5151 0.66 0.73513
Target:  5'- uUUUcGCC-UCUCCGCGCCGAUCGg- -3'
miRNA:   3'- cAAAcCGGuGGGGGCGCGGCUGGUag -5'
5202 5' -60.4 NC_001798.1 + 45528 0.66 0.73513
Target:  5'- ---gGGCCcguGCCCCC-CGCgGACCc-- -3'
miRNA:   3'- caaaCCGG---UGGGGGcGCGgCUGGuag -5'
5202 5' -60.4 NC_001798.1 + 4736 0.66 0.725538
Target:  5'- ---cGGCCuCCCCgGaCGCCGggGCCGccUCg -3'
miRNA:   3'- caaaCCGGuGGGGgC-GCGGC--UGGU--AG- -5'
5202 5' -60.4 NC_001798.1 + 21485 0.66 0.725538
Target:  5'- ---cGGCCGgcCCCCCGgGUC-ACCGUa -3'
miRNA:   3'- caaaCCGGU--GGGGGCgCGGcUGGUAg -5'
5202 5' -60.4 NC_001798.1 + 85987 0.66 0.725538
Target:  5'- ---aGGCCGCCgCCgggGCGCUGGCgCAg- -3'
miRNA:   3'- caaaCCGGUGGgGG---CGCGGCUG-GUag -5'
5202 5' -60.4 NC_001798.1 + 91781 0.66 0.71587
Target:  5'- ---cGGCCACgCCCCcUGCCGAUgAc- -3'
miRNA:   3'- caaaCCGGUG-GGGGcGCGGCUGgUag -5'
5202 5' -60.4 NC_001798.1 + 30578 0.66 0.71587
Target:  5'- -----cCCGCCCCUGCGCUG-CCAg- -3'
miRNA:   3'- caaaccGGUGGGGGCGCGGCuGGUag -5'
5202 5' -60.4 NC_001798.1 + 31465 0.66 0.71587
Target:  5'- ----cGCCGUCUCCGCGCCGcCCcgCg -3'
miRNA:   3'- caaacCGGUGGGGGCGCGGCuGGuaG- -5'
5202 5' -60.4 NC_001798.1 + 93767 0.66 0.71587
Target:  5'- ----cGCCACCCCaaguucgcgaGCGCCGcccgggggGCCAUUg -3'
miRNA:   3'- caaacCGGUGGGGg---------CGCGGC--------UGGUAG- -5'
5202 5' -60.4 NC_001798.1 + 146654 0.66 0.71587
Target:  5'- ---cGGCCGgCCCCaCGCCcuuCCAUUa -3'
miRNA:   3'- caaaCCGGUgGGGGcGCGGcu-GGUAG- -5'
5202 5' -60.4 NC_001798.1 + 151010 0.66 0.71587
Target:  5'- ----cGCCcgACCCCCGC-CCGACCc-- -3'
miRNA:   3'- caaacCGG--UGGGGGCGcGGCUGGuag -5'
5202 5' -60.4 NC_001798.1 + 151032 0.66 0.71587
Target:  5'- ----cGCCcgACCCCCGC-CCGACCc-- -3'
miRNA:   3'- caaacCGG--UGGGGGCGcGGCUGGuag -5'
5202 5' -60.4 NC_001798.1 + 151054 0.66 0.71587
Target:  5'- ----cGCCcgACCCCCGC-CCGACCc-- -3'
miRNA:   3'- caaacCGG--UGGGGGCGcGGCUGGuag -5'
5202 5' -60.4 NC_001798.1 + 151076 0.66 0.71587
Target:  5'- ----cGCCcgACCCCCGC-CCGACCc-- -3'
miRNA:   3'- caaacCGG--UGGGGGCGcGGCUGGuag -5'
5202 5' -60.4 NC_001798.1 + 117621 0.66 0.71587
Target:  5'- ----cGCCACCCCCGUGgccaCGGaCAUCa -3'
miRNA:   3'- caaacCGGUGGGGGCGCg---GCUgGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.