Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5204 | 3' | -53.9 | NC_001798.1 | + | 112053 | 0.69 | 0.831048 |
Target: 5'- uUCGCagCGAGGUGCAGUAUucggccaggcauucgUCCAGCa- -3' miRNA: 3'- cGGCG--GUUCCACGUCAUG---------------AGGUUGau -5' |
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5204 | 3' | -53.9 | NC_001798.1 | + | 120344 | 0.7 | 0.800802 |
Target: 5'- cGCC-CCGGGGUGCAGcg--CCAGCa- -3' miRNA: 3'- -CGGcGGUUCCACGUCaugaGGUUGau -5' |
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5204 | 3' | -53.9 | NC_001798.1 | + | 122434 | 0.66 | 0.9378 |
Target: 5'- uGCCGCCGAGcGcGUcGUGCgcccccaCCAGCUGu -3' miRNA: 3'- -CGGCGGUUC-CaCGuCAUGa------GGUUGAU- -5' |
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5204 | 3' | -53.9 | NC_001798.1 | + | 130010 | 0.69 | 0.852708 |
Target: 5'- aUCGCCGAacGGUGCuGUACaCCGGCUc -3' miRNA: 3'- cGGCGGUU--CCACGuCAUGaGGUUGAu -5' |
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5204 | 3' | -53.9 | NC_001798.1 | + | 141076 | 0.69 | 0.827598 |
Target: 5'- gGCCGCCuAGGGgagcugacgGCAGaACUCCugucGCUAc -3' miRNA: 3'- -CGGCGG-UUCCa--------CGUCaUGAGGu---UGAU- -5' |
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5204 | 3' | -53.9 | NC_001798.1 | + | 147038 | 0.72 | 0.671317 |
Target: 5'- gGCCGCCGAGGUGC---GCcCCGGCc- -3' miRNA: 3'- -CGGCGGUUCCACGucaUGaGGUUGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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