Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5204 | 3' | -53.9 | NC_001798.1 | + | 74345 | 0.7 | 0.791535 |
Target: 5'- cGCC-CCAAGGUGCGGUGggCgGGCg- -3' miRNA: 3'- -CGGcGGUUCCACGUCAUgaGgUUGau -5' |
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5204 | 3' | -53.9 | NC_001798.1 | + | 2260 | 0.7 | 0.782116 |
Target: 5'- cGCCGCCGGGGgGCGGggcgGCgcagcgcgcggCCAGCg- -3' miRNA: 3'- -CGGCGGUUCCaCGUCa---UGa----------GGUUGau -5' |
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5204 | 3' | -53.9 | NC_001798.1 | + | 147038 | 0.72 | 0.671317 |
Target: 5'- gGCCGCCGAGGUGC---GCcCCGGCc- -3' miRNA: 3'- -CGGCGGUUCCACGucaUGaGGUUGau -5' |
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5204 | 3' | -53.9 | NC_001798.1 | + | 94569 | 0.74 | 0.576947 |
Target: 5'- gGCCGCCAAGGcGCGGgucgCCAGCc- -3' miRNA: 3'- -CGGCGGUUCCaCGUCaugaGGUUGau -5' |
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5204 | 3' | -53.9 | NC_001798.1 | + | 34976 | 0.85 | 0.151169 |
Target: 5'- gGCCGCCGAGGUGCGGgggcccCUCCGGCc- -3' miRNA: 3'- -CGGCGGUUCCACGUCau----GAGGUUGau -5' |
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5204 | 3' | -53.9 | NC_001798.1 | + | 85734 | 1.09 | 0.003758 |
Target: 5'- cGCCGCCAAGGUGCAGUACUCCAACUAu -3' miRNA: 3'- -CGGCGGUUCCACGUCAUGAGGUUGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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