Results 41 - 60 of 84 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 94984 | 0.68 | 0.608222 |
Target: 5'- uGCAGgcggCgGCcGCCUGGGCCCcgCAg- -3' miRNA: 3'- gCGUCa---GgCGuUGGGCCCGGGa-GUag -5' |
|||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 135499 | 0.68 | 0.622127 |
Target: 5'- aCGCGGacgCCGCGcacggcGCgauccaggacgcccgCCGGGCCCUCGa- -3' miRNA: 3'- -GCGUCa--GGCGU------UG---------------GGCCCGGGAGUag -5' |
|||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 91515 | 0.68 | 0.618152 |
Target: 5'- gGCGGacCCGC-GCCCGGGuCCCUUc-- -3' miRNA: 3'- gCGUCa-GGCGuUGGGCCC-GGGAGuag -5' |
|||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 86831 | 0.68 | 0.618152 |
Target: 5'- uCGCuccGGcUCC-CGGCCCGGGCCCggCcgCg -3' miRNA: 3'- -GCG---UC-AGGcGUUGGGCCCGGGa-GuaG- -5' |
|||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 59788 | 0.68 | 0.618152 |
Target: 5'- aCGCGGg-CGguACCCGGGCCUggcCcUCg -3' miRNA: 3'- -GCGUCagGCguUGGGCCCGGGa--GuAG- -5' |
|||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 10488 | 0.68 | 0.618152 |
Target: 5'- cCGCuGUCCGUcuCCaGGGCCC-CGUa -3' miRNA: 3'- -GCGuCAGGCGuuGGgCCCGGGaGUAg -5' |
|||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 4131 | 0.68 | 0.618152 |
Target: 5'- cCGgGGcgCCGCccCCgGGGCCCUCGc- -3' miRNA: 3'- -GCgUCa-GGCGuuGGgCCCGGGAGUag -5' |
|||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 3255 | 0.69 | 0.520359 |
Target: 5'- cCGCGGcgCCGUAGCCggCGGGCaccgcgcgCUCGUCg -3' miRNA: 3'- -GCGUCa-GGCGUUGG--GCCCGg-------GAGUAG- -5' |
|||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 78571 | 0.69 | 0.529917 |
Target: 5'- gCGCuGgCCGCGcgcgaGCgCCGGGCCCagAUCg -3' miRNA: 3'- -GCGuCaGGCGU-----UG-GGCCCGGGagUAG- -5' |
|||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 135799 | 0.69 | 0.54922 |
Target: 5'- gGCcguGUgCGCGGCCCGGGgCgUCAUg -3' miRNA: 3'- gCGu--CAgGCGUUGGGCCCgGgAGUAg -5' |
|||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 51281 | 0.69 | 0.54922 |
Target: 5'- aCGCGGgccCCGCGgggaggcuACCUGGGCCCg---- -3' miRNA: 3'- -GCGUCa--GGCGU--------UGGGCCCGGGaguag -5' |
|||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 32030 | 0.69 | 0.558953 |
Target: 5'- gGCGa-CCGCGGCCaCGGGCCgCUCGc- -3' miRNA: 3'- gCGUcaGGCGUUGG-GCCCGG-GAGUag -5' |
|||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 48379 | 0.69 | 0.558953 |
Target: 5'- cCGCGGggcgugccgCCGCGACCgcaCGGGCCCcCGc- -3' miRNA: 3'- -GCGUCa--------GGCGUUGG---GCCCGGGaGUag -5' |
|||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 154278 | 0.7 | 0.482852 |
Target: 5'- gGC-GUgCGCAGCCCGGGCCgUguUg -3' miRNA: 3'- gCGuCAgGCGUUGGGCCCGGgAguAg -5' |
|||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 38890 | 0.7 | 0.482852 |
Target: 5'- -cCAGcCCGCAcagGCCuCGGGCCUUCAg- -3' miRNA: 3'- gcGUCaGGCGU---UGG-GCCCGGGAGUag -5' |
|||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 15137 | 0.7 | 0.492112 |
Target: 5'- gGgGGUUCGCcgucCCCGGcGCCCUCAa- -3' miRNA: 3'- gCgUCAGGCGuu--GGGCC-CGGGAGUag -5' |
|||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 153286 | 0.7 | 0.492112 |
Target: 5'- cCGCgGGUCCGCcgucuucgugGGCCCGGGCUCgggC-UCg -3' miRNA: 3'- -GCG-UCAGGCG----------UUGGGCCCGGGa--GuAG- -5' |
|||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 4879 | 0.7 | 0.498641 |
Target: 5'- gGCGGUCCGUcggcuggauccggaGAUCCGGGgCCgccggUCGUCu -3' miRNA: 3'- gCGUCAGGCG--------------UUGGGCCCgGG-----AGUAG- -5' |
|||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 43132 | 0.7 | 0.501452 |
Target: 5'- gCGCGcGUcCCGCGucACgCGGGCCCagUCGUCc -3' miRNA: 3'- -GCGU-CA-GGCGU--UGgGCCCGGG--AGUAG- -5' |
|||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 34800 | 0.7 | 0.473678 |
Target: 5'- gCGCGGcCCGgGGCCCcgGGGCCC-CcgCg -3' miRNA: 3'- -GCGUCaGGCgUUGGG--CCCGGGaGuaG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home