miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5204 5' -60.5 NC_001798.1 + 10710 0.7 0.501452
Target:  5'- cCGCAGgcauccagggguUCCGCGGCCCacaguaguuuguGGGCCCgggugCGUUc -3'
miRNA:   3'- -GCGUC------------AGGCGUUGGG------------CCCGGGa----GUAG- -5'
5204 5' -60.5 NC_001798.1 + 154278 0.7 0.482852
Target:  5'- gGC-GUgCGCAGCCCGGGCCgUguUg -3'
miRNA:   3'- gCGuCAgGCGUUGGGCCCGGgAguAg -5'
5204 5' -60.5 NC_001798.1 + 122595 0.7 0.455598
Target:  5'- uCGCGuGUCUGCGGgcCCUGGGCCaCUCuAUCc -3'
miRNA:   3'- -GCGU-CAGGCGUU--GGGCCCGG-GAG-UAG- -5'
5204 5' -60.5 NC_001798.1 + 153286 0.7 0.492112
Target:  5'- cCGCgGGUCCGCcgucuucgugGGCCCGGGCUCgggC-UCg -3'
miRNA:   3'- -GCG-UCAGGCG----------UUGGGCCCGGGa--GuAG- -5'
5204 5' -60.5 NC_001798.1 + 43132 0.7 0.501452
Target:  5'- gCGCGcGUcCCGCGucACgCGGGCCCagUCGUCc -3'
miRNA:   3'- -GCGU-CA-GGCGU--UGgGCCCGGG--AGUAG- -5'
5204 5' -60.5 NC_001798.1 + 4879 0.7 0.498641
Target:  5'- gGCGGUCCGUcggcuggauccggaGAUCCGGGgCCgccggUCGUCu -3'
miRNA:   3'- gCGUCAGGCG--------------UUGGGCCCgGG-----AGUAG- -5'
5204 5' -60.5 NC_001798.1 + 15137 0.7 0.492112
Target:  5'- gGgGGUUCGCcgucCCCGGcGCCCUCAa- -3'
miRNA:   3'- gCgUCAGGCGuu--GGGCC-CGGGAGUag -5'
5204 5' -60.5 NC_001798.1 + 38890 0.7 0.482852
Target:  5'- -cCAGcCCGCAcagGCCuCGGGCCUUCAg- -3'
miRNA:   3'- gcGUCaGGCGU---UGG-GCCCGGGAGUag -5'
5204 5' -60.5 NC_001798.1 + 34800 0.7 0.473678
Target:  5'- gCGCGGcCCGgGGCCCcgGGGCCC-CcgCg -3'
miRNA:   3'- -GCGUCaGGCgUUGGG--CCCGGGaGuaG- -5'
5204 5' -60.5 NC_001798.1 + 77271 0.7 0.473678
Target:  5'- gCGCGGccgcCCGCGACCCGGccucGCCCcUGUCc -3'
miRNA:   3'- -GCGUCa---GGCGUUGGGCC----CGGGaGUAG- -5'
5204 5' -60.5 NC_001798.1 + 138151 0.7 0.464592
Target:  5'- uGCGGUCgCGCc-CCCGGGUCCUgGg- -3'
miRNA:   3'- gCGUCAG-GCGuuGGGCCCGGGAgUag -5'
5204 5' -60.5 NC_001798.1 + 32030 0.69 0.558953
Target:  5'- gGCGa-CCGCGGCCaCGGGCCgCUCGc- -3'
miRNA:   3'- gCGUcaGGCGUUGG-GCCCGG-GAGUag -5'
5204 5' -60.5 NC_001798.1 + 3255 0.69 0.520359
Target:  5'- cCGCGGcgCCGUAGCCggCGGGCaccgcgcgCUCGUCg -3'
miRNA:   3'- -GCGUCa-GGCGUUGG--GCCCGg-------GAGUAG- -5'
5204 5' -60.5 NC_001798.1 + 51281 0.69 0.54922
Target:  5'- aCGCGGgccCCGCGgggaggcuACCUGGGCCCg---- -3'
miRNA:   3'- -GCGUCa--GGCGU--------UGGGCCCGGGaguag -5'
5204 5' -60.5 NC_001798.1 + 48379 0.69 0.558953
Target:  5'- cCGCGGggcgugccgCCGCGACCgcaCGGGCCCcCGc- -3'
miRNA:   3'- -GCGUCa--------GGCGUUGG---GCCCGGGaGUag -5'
5204 5' -60.5 NC_001798.1 + 135799 0.69 0.54922
Target:  5'- gGCcguGUgCGCGGCCCGGGgCgUCAUg -3'
miRNA:   3'- gCGu--CAgGCGUUGGGCCCgGgAGUAg -5'
5204 5' -60.5 NC_001798.1 + 78571 0.69 0.529917
Target:  5'- gCGCuGgCCGCGcgcgaGCgCCGGGCCCagAUCg -3'
miRNA:   3'- -GCGuCaGGCGU-----UG-GGCCCGGGagUAG- -5'
5204 5' -60.5 NC_001798.1 + 79398 0.68 0.568735
Target:  5'- gCGgAGUCCGC-GCCCGcGCCCcugcUCGUUg -3'
miRNA:   3'- -GCgUCAGGCGuUGGGCcCGGG----AGUAG- -5'
5204 5' -60.5 NC_001798.1 + 94984 0.68 0.608222
Target:  5'- uGCAGgcggCgGCcGCCUGGGCCCcgCAg- -3'
miRNA:   3'- gCGUCa---GgCGuUGGGCCCGGGa-GUag -5'
5204 5' -60.5 NC_001798.1 + 149472 0.68 0.598308
Target:  5'- aCGCGGgggCCGCGGCCCGcagcaGGUCCgccaCGUUc -3'
miRNA:   3'- -GCGUCa--GGCGUUGGGC-----CCGGGa---GUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.