Results 61 - 80 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 46897 | 0.67 | 0.636046 |
Target: 5'- uGCuGUCCGUuggacaaggaucGCCCuGGGCCCccacugacUCAUCg -3' miRNA: 3'- gCGuCAGGCGu-----------UGGG-CCCGGG--------AGUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 51169 | 0.67 | 0.632069 |
Target: 5'- aCGCGcGUCCGaGGCCCGGGCggcggcgcccccccgCCgggCGUCc -3' miRNA: 3'- -GCGU-CAGGCgUUGGGCCCG---------------GGa--GUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 75566 | 0.67 | 0.638035 |
Target: 5'- aCGUGG-CCGCccaCCGGcCCCUCAUCc -3' miRNA: 3'- -GCGUCaGGCGuugGGCCcGGGAGUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 80902 | 0.67 | 0.638035 |
Target: 5'- gCGCAGcucCCGC-GCCUGucGGCgCUCAUCg -3' miRNA: 3'- -GCGUCa--GGCGuUGGGC--CCGgGAGUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 74554 | 0.67 | 0.642011 |
Target: 5'- uGUGGUCCcCAggggggacggagaagGCUCGGGCCCggUCGUCc -3' miRNA: 3'- gCGUCAGGcGU---------------UGGGCCCGGG--AGUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 150038 | 0.67 | 0.647973 |
Target: 5'- cCG-AGUCCGgGGCCCGGcgcggcgccGCCCUCu-- -3' miRNA: 3'- -GCgUCAGGCgUUGGGCC---------CGGGAGuag -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 36319 | 0.66 | 0.716773 |
Target: 5'- gCGCGGgCCGgGGCCgGGGCUcgCUgGUCc -3' miRNA: 3'- -GCGUCaGGCgUUGGgCCCGG--GAgUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 25379 | 0.66 | 0.716773 |
Target: 5'- cCGCg--CCGUGGCgCCcGGCCCUCAUg -3' miRNA: 3'- -GCGucaGGCGUUG-GGcCCGGGAGUAg -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 73968 | 0.66 | 0.716773 |
Target: 5'- gCGCGG-CCGCGGgcUCCGGGCCg-CcgCg -3' miRNA: 3'- -GCGUCaGGCGUU--GGGCCCGGgaGuaG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 2449 | 0.66 | 0.726395 |
Target: 5'- gGCGGcgCCaGCcGCCCugcgggucgGGGCCCUCGg- -3' miRNA: 3'- gCGUCa-GG-CGuUGGG---------CCCGGGAGUag -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 123453 | 0.66 | 0.726395 |
Target: 5'- gCGCGcGcCCcCGACCCGGGgCCCgaagccgaccUCGUCg -3' miRNA: 3'- -GCGU-CaGGcGUUGGGCCC-GGG----------AGUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 135440 | 0.66 | 0.726395 |
Target: 5'- uGCGGUCUGCGGCggcaCCGGGgCUgCGUUc -3' miRNA: 3'- gCGUCAGGCGUUG----GGCCCgGGaGUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 82199 | 0.66 | 0.716773 |
Target: 5'- gGCAGUgCCGCcuucUCCGGGCCUUg--- -3' miRNA: 3'- gCGUCA-GGCGuu--GGGCCCGGGAguag -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 47380 | 0.66 | 0.710967 |
Target: 5'- cCGCAGggagccacucCCGCGGCCCccguggguuacgcaGGCCCUCGc- -3' miRNA: 3'- -GCGUCa---------GGCGUUGGGc-------------CCGGGAGUag -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 4711 | 0.66 | 0.710967 |
Target: 5'- aCGCcGUCCGCGgcaggcucgucgacgGCCUccccggacgccgGGGCCgcCUCGUCg -3' miRNA: 3'- -GCGuCAGGCGU---------------UGGG------------CCCGG--GAGUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 153220 | 0.66 | 0.707083 |
Target: 5'- cCGC---CCGaCGGCCCGGGCCCgCGg- -3' miRNA: 3'- -GCGucaGGC-GUUGGGCCCGGGaGUag -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 93160 | 0.66 | 0.707083 |
Target: 5'- gGCGGgcgaCGCcGCCCuGGCCCUggagucCAUCg -3' miRNA: 3'- gCGUCag--GCGuUGGGcCCGGGA------GUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 35279 | 0.66 | 0.707083 |
Target: 5'- aCGCGGg-CGgGGCUCGGGCUCUCc-- -3' miRNA: 3'- -GCGUCagGCgUUGGGCCCGGGAGuag -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 52864 | 0.66 | 0.697333 |
Target: 5'- aGCgAGUCCGUgcuggGGCCgCGGGUCCgcgCGUg -3' miRNA: 3'- gCG-UCAGGCG-----UUGG-GCCCGGGa--GUAg -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 101733 | 0.66 | 0.687532 |
Target: 5'- -aCAGaUCgGCGGCCCGGGCCgU-GUCc -3' miRNA: 3'- gcGUC-AGgCGUUGGGCCCGGgAgUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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