#
miRNA: 3'- -GCGUCagGCgUUGGGCCCGGGAGuag -5'
miRNA: 3'- gCG-UCAGGCG-----UUGG-GCCCGGGa--GUAg -5'
miRNA: 3'- gcGUC-AGgCGUUGGGCCCGGgAgUAG- -5'
miRNA: 3'- gCGUCa-GGCGUugGGCCCGGGaGUag -5'
Results 81 - 84 of 84 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio#
|
P value |
| Predicted miRNA align pattern | |||||||
| 5204 | 5' | -60.5 | NC_001798.1 | + | 35279 | 0.66 | 0.707083 |
|
Target: 5'- aCGCGGg-CGgGGCUCGGGCUCUCc-- -3' miRNA: 3'- -GCGUCagGCgUUGGGCCCGGGAGuag -5' |
|||||||
| 5204 | 5' | -60.5 | NC_001798.1 | + | 52864 | 0.66 | 0.697333 |
|
Target: 5'- aGCgAGUCCGUgcuggGGCCgCGGGUCCgcgCGUg -3' miRNA: 3'- gCG-UCAGGCG-----UUGG-GCCCGGGa--GUAg -5' |
|||||||
| 5204 | 5' | -60.5 | NC_001798.1 | + | 101733 | 0.66 | 0.687532 |
|
Target: 5'- -aCAGaUCgGCGGCCCGGGCCgU-GUCc -3' miRNA: 3'- gcGUC-AGgCGUUGGGCCCGGgAgUAG- -5' |
|||||||
| 5204 | 5' | -60.5 | NC_001798.1 | + | 31996 | 0.66 | 0.73594 |
|
Target: 5'- gGCGGcgCCGCG--CCGGGCCC-CGg- -3' miRNA: 3'- gCGUCa-GGCGUugGGCCCGGGaGUag -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home