miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5204 5' -60.5 NC_001798.1 + 59788 0.68 0.618152
Target:  5'- aCGCGGg-CGguACCCGGGCCUggcCcUCg -3'
miRNA:   3'- -GCGUCagGCguUGGGCCCGGGa--GuAG- -5'
5204 5' -60.5 NC_001798.1 + 72240 0.68 0.598308
Target:  5'- aGCAG-CUGCGGCCCGcGGUCCa---- -3'
miRNA:   3'- gCGUCaGGCGUUGGGC-CCGGGaguag -5'
5204 5' -60.5 NC_001798.1 + 73968 0.66 0.716773
Target:  5'- gCGCGG-CCGCGGgcUCCGGGCCg-CcgCg -3'
miRNA:   3'- -GCGUCaGGCGUU--GGGCCCGGgaGuaG- -5'
5204 5' -60.5 NC_001798.1 + 74554 0.67 0.642011
Target:  5'- uGUGGUCCcCAggggggacggagaagGCUCGGGCCCggUCGUCc -3'
miRNA:   3'- gCGUCAGGcGU---------------UGGGCCCGGG--AGUAG- -5'
5204 5' -60.5 NC_001798.1 + 75121 0.72 0.362664
Target:  5'- cCGCAGUCCgggcagggcggcgGCGACgaCGGGCCCgcgagcccgUCGUCg -3'
miRNA:   3'- -GCGUCAGG-------------CGUUGg-GCCCGGG---------AGUAG- -5'
5204 5' -60.5 NC_001798.1 + 75566 0.67 0.638035
Target:  5'- aCGUGG-CCGCccaCCGGcCCCUCAUCc -3'
miRNA:   3'- -GCGUCaGGCGuugGGCCcGGGAGUAG- -5'
5204 5' -60.5 NC_001798.1 + 77271 0.7 0.473678
Target:  5'- gCGCGGccgcCCGCGACCCGGccucGCCCcUGUCc -3'
miRNA:   3'- -GCGUCa---GGCGUUGGGCC----CGGGaGUAG- -5'
5204 5' -60.5 NC_001798.1 + 78571 0.69 0.529917
Target:  5'- gCGCuGgCCGCGcgcgaGCgCCGGGCCCagAUCg -3'
miRNA:   3'- -GCGuCaGGCGU-----UG-GGCCCGGGagUAG- -5'
5204 5' -60.5 NC_001798.1 + 79398 0.68 0.568735
Target:  5'- gCGgAGUCCGC-GCCCGcGCCCcugcUCGUUg -3'
miRNA:   3'- -GCgUCAGGCGuUGGGCcCGGG----AGUAG- -5'
5204 5' -60.5 NC_001798.1 + 79976 0.67 0.667807
Target:  5'- cCGC-GUCCGCcg-CCGGGCCCcCGg- -3'
miRNA:   3'- -GCGuCAGGCGuugGGCCCGGGaGUag -5'
5204 5' -60.5 NC_001798.1 + 80902 0.67 0.638035
Target:  5'- gCGCAGcucCCGC-GCCUGucGGCgCUCAUCg -3'
miRNA:   3'- -GCGUCa--GGCGuUGGGC--CCGgGAGUAG- -5'
5204 5' -60.5 NC_001798.1 + 82022 0.66 0.726395
Target:  5'- cCGCGG-CCGCcGCCagacaacagCGGGuCCCUCGc- -3'
miRNA:   3'- -GCGUCaGGCGuUGG---------GCCC-GGGAGUag -5'
5204 5' -60.5 NC_001798.1 + 82199 0.66 0.716773
Target:  5'- gGCAGUgCCGCcuucUCCGGGCCUUg--- -3'
miRNA:   3'- gCGUCA-GGCGuu--GGGCCCGGGAguag -5'
5204 5' -60.5 NC_001798.1 + 85771 1.09 0.001031
Target:  5'- gCGCAGUCCGCAACCCGGGCCCUCAUCg -3'
miRNA:   3'- -GCGUCAGGCGUUGGGCCCGGGAGUAG- -5'
5204 5' -60.5 NC_001798.1 + 86650 0.78 0.164885
Target:  5'- gGCgGGUCUGUAuaGCCCugcGGGCCCUCAUCu -3'
miRNA:   3'- gCG-UCAGGCGU--UGGG---CCCGGGAGUAG- -5'
5204 5' -60.5 NC_001798.1 + 86831 0.68 0.618152
Target:  5'- uCGCuccGGcUCC-CGGCCCGGGCCCggCcgCg -3'
miRNA:   3'- -GCG---UC-AGGcGUUGGGCCCGGGa-GuaG- -5'
5204 5' -60.5 NC_001798.1 + 87196 0.72 0.371269
Target:  5'- gGCGGcuggccaCCGuCAGCCgCGaGGCCCUCAUCc -3'
miRNA:   3'- gCGUCa------GGC-GUUGG-GC-CCGGGAGUAG- -5'
5204 5' -60.5 NC_001798.1 + 90231 0.67 0.667807
Target:  5'- gGCGuUCCGCGACCgGaaaGGCCagCUCGUCc -3'
miRNA:   3'- gCGUcAGGCGUUGGgC---CCGG--GAGUAG- -5'
5204 5' -60.5 NC_001798.1 + 91515 0.68 0.618152
Target:  5'- gGCGGacCCGC-GCCCGGGuCCCUUc-- -3'
miRNA:   3'- gCGUCa-GGCGuUGGGCCC-GGGAGuag -5'
5204 5' -60.5 NC_001798.1 + 93160 0.66 0.707083
Target:  5'- gGCGGgcgaCGCcGCCCuGGCCCUggagucCAUCg -3'
miRNA:   3'- gCGUCag--GCGuUGGGcCCGGGA------GUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.