miRNA display CGI


Results 61 - 80 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5204 5' -60.5 NC_001798.1 + 94984 0.68 0.608222
Target:  5'- uGCAGgcggCgGCcGCCUGGGCCCcgCAg- -3'
miRNA:   3'- gCGUCa---GgCGuUGGGCCCGGGa-GUag -5'
5204 5' -60.5 NC_001798.1 + 101733 0.66 0.687532
Target:  5'- -aCAGaUCgGCGGCCCGGGCCgU-GUCc -3'
miRNA:   3'- gcGUC-AGgCGUUGGGCCCGGgAgUAG- -5'
5204 5' -60.5 NC_001798.1 + 106469 0.67 0.666818
Target:  5'- uGCAGUCugggcggCGCGGCCCGaGGUCCacuUCg -3'
miRNA:   3'- gCGUCAG-------GCGUUGGGC-CCGGGaguAG- -5'
5204 5' -60.5 NC_001798.1 + 113005 0.71 0.403714
Target:  5'- aGCuugGGUCCG-GACCCGGGCCCgcgCcgCc -3'
miRNA:   3'- gCG---UCAGGCgUUGGGCCCGGGa--GuaG- -5'
5204 5' -60.5 NC_001798.1 + 117394 0.67 0.677687
Target:  5'- gGCAccGUCCGCAACCCcguuacggacauGGGCaaCCUCc-- -3'
miRNA:   3'- gCGU--CAGGCGUUGGG------------CCCG--GGAGuag -5'
5204 5' -60.5 NC_001798.1 + 118535 0.72 0.355727
Target:  5'- cCGguGUCuCGCGGCCCGGcGCCaUgAUCa -3'
miRNA:   3'- -GCguCAG-GCGUUGGGCC-CGGgAgUAG- -5'
5204 5' -60.5 NC_001798.1 + 122595 0.7 0.455598
Target:  5'- uCGCGuGUCUGCGGgcCCUGGGCCaCUCuAUCc -3'
miRNA:   3'- -GCGU-CAGGCGUU--GGGCCCGG-GAG-UAG- -5'
5204 5' -60.5 NC_001798.1 + 123453 0.66 0.726395
Target:  5'- gCGCGcGcCCcCGACCCGGGgCCCgaagccgaccUCGUCg -3'
miRNA:   3'- -GCGU-CaGGcGUUGGGCCC-GGG----------AGUAG- -5'
5204 5' -60.5 NC_001798.1 + 124431 0.75 0.266097
Target:  5'- cCGCGGUCgCGCGGgCCGuGGCcagagCCUCAUCg -3'
miRNA:   3'- -GCGUCAG-GCGUUgGGC-CCG-----GGAGUAG- -5'
5204 5' -60.5 NC_001798.1 + 127959 0.66 0.73594
Target:  5'- gGCccGGcCCGCGuCCCcGGCCCUC-UCu -3'
miRNA:   3'- gCG--UCaGGCGUuGGGcCCGGGAGuAG- -5'
5204 5' -60.5 NC_001798.1 + 131332 0.68 0.568735
Target:  5'- aCGCcGcCCGCGcCCCGGGCgCgaCGUCg -3'
miRNA:   3'- -GCGuCaGGCGUuGGGCCCG-GgaGUAG- -5'
5204 5' -60.5 NC_001798.1 + 135440 0.66 0.726395
Target:  5'- uGCGGUCUGCGGCggcaCCGGGgCUgCGUUc -3'
miRNA:   3'- gCGUCAGGCGUUG----GGCCCgGGaGUAG- -5'
5204 5' -60.5 NC_001798.1 + 135499 0.68 0.622127
Target:  5'- aCGCGGacgCCGCGcacggcGCgauccaggacgcccgCCGGGCCCUCGa- -3'
miRNA:   3'- -GCGUCa--GGCGU------UG---------------GGCCCGGGAGUag -5'
5204 5' -60.5 NC_001798.1 + 135799 0.69 0.54922
Target:  5'- gGCcguGUgCGCGGCCCGGGgCgUCAUg -3'
miRNA:   3'- gCGu--CAgGCGUUGGGCCCgGgAGUAg -5'
5204 5' -60.5 NC_001798.1 + 138151 0.7 0.464592
Target:  5'- uGCGGUCgCGCc-CCCGGGUCCUgGg- -3'
miRNA:   3'- gCGUCAG-GCGuuGGGCCCGGGAgUag -5'
5204 5' -60.5 NC_001798.1 + 147207 0.76 0.215394
Target:  5'- gGCGGUCCG--GCCCGGGCCCcCGg- -3'
miRNA:   3'- gCGUCAGGCguUGGGCCCGGGaGUag -5'
5204 5' -60.5 NC_001798.1 + 149472 0.68 0.598308
Target:  5'- aCGCGGgggCCGCGGCCCGcagcaGGUCCgccaCGUUc -3'
miRNA:   3'- -GCGUCa--GGCGUUGGGC-----CCGGGa---GUAG- -5'
5204 5' -60.5 NC_001798.1 + 150038 0.67 0.647973
Target:  5'- cCG-AGUCCGgGGCCCGGcgcggcgccGCCCUCu-- -3'
miRNA:   3'- -GCgUCAGGCgUUGGGCC---------CGGGAGuag -5'
5204 5' -60.5 NC_001798.1 + 150221 0.67 0.677687
Target:  5'- uGguG-CCGCGGgggacCCCGGGUCCUCc-- -3'
miRNA:   3'- gCguCaGGCGUU-----GGGCCCGGGAGuag -5'
5204 5' -60.5 NC_001798.1 + 150358 0.67 0.666818
Target:  5'- uGCGcGUCCaccggcacggcggGCGGCgCGGGCCCggccgCGUCc -3'
miRNA:   3'- gCGU-CAGG-------------CGUUGgGCCCGGGa----GUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.