miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5204 5' -60.5 NC_001798.1 + 123453 0.66 0.726395
Target:  5'- gCGCGcGcCCcCGACCCGGGgCCCgaagccgaccUCGUCg -3'
miRNA:   3'- -GCGU-CaGGcGUUGGGCCC-GGG----------AGUAG- -5'
5204 5' -60.5 NC_001798.1 + 135440 0.66 0.726395
Target:  5'- uGCGGUCUGCGGCggcaCCGGGgCUgCGUUc -3'
miRNA:   3'- gCGUCAGGCGUUG----GGCCCgGGaGUAG- -5'
5204 5' -60.5 NC_001798.1 + 82022 0.66 0.726395
Target:  5'- cCGCGG-CCGCcGCCagacaacagCGGGuCCCUCGc- -3'
miRNA:   3'- -GCGUCaGGCGuUGG---------GCCC-GGGAGUag -5'
5204 5' -60.5 NC_001798.1 + 127959 0.66 0.73594
Target:  5'- gGCccGGcCCGCGuCCCcGGCCCUC-UCu -3'
miRNA:   3'- gCG--UCaGGCGUuGGGcCCGGGAGuAG- -5'
5204 5' -60.5 NC_001798.1 + 7709 0.66 0.73594
Target:  5'- uGCuGcCCGCGGaccaCCGGGCCUUUuuUCg -3'
miRNA:   3'- gCGuCaGGCGUUg---GGCCCGGGAGu-AG- -5'
5204 5' -60.5 NC_001798.1 + 93160 0.66 0.707083
Target:  5'- gGCGGgcgaCGCcGCCCuGGCCCUggagucCAUCg -3'
miRNA:   3'- gCGUCag--GCGuUGGGcCCGGGA------GUAG- -5'
5204 5' -60.5 NC_001798.1 + 35279 0.66 0.707083
Target:  5'- aCGCGGg-CGgGGCUCGGGCUCUCc-- -3'
miRNA:   3'- -GCGUCagGCgUUGGGCCCGGGAGuag -5'
5204 5' -60.5 NC_001798.1 + 80902 0.67 0.638035
Target:  5'- gCGCAGcucCCGC-GCCUGucGGCgCUCAUCg -3'
miRNA:   3'- -GCGUCa--GGCGuUGGGC--CCGgGAGUAG- -5'
5204 5' -60.5 NC_001798.1 + 74554 0.67 0.642011
Target:  5'- uGUGGUCCcCAggggggacggagaagGCUCGGGCCCggUCGUCc -3'
miRNA:   3'- gCGUCAGGcGU---------------UGGGCCCGGG--AGUAG- -5'
5204 5' -60.5 NC_001798.1 + 150038 0.67 0.647973
Target:  5'- cCG-AGUCCGgGGCCCGGcgcggcgccGCCCUCu-- -3'
miRNA:   3'- -GCgUCAGGCgUUGGGCC---------CGGGAGuag -5'
5204 5' -60.5 NC_001798.1 + 150358 0.67 0.666818
Target:  5'- uGCGcGUCCaccggcacggcggGCGGCgCGGGCCCggccgCGUCc -3'
miRNA:   3'- gCGU-CAGG-------------CGUUGgGCCCGGGa----GUAG- -5'
5204 5' -60.5 NC_001798.1 + 106469 0.67 0.666818
Target:  5'- uGCAGUCugggcggCGCGGCCCGaGGUCCacuUCg -3'
miRNA:   3'- gCGUCAG-------GCGUUGGGC-CCGGGaguAG- -5'
5204 5' -60.5 NC_001798.1 + 12129 0.67 0.667807
Target:  5'- aGUAGUuuGUauggggGACCUGGGCCCcCAc- -3'
miRNA:   3'- gCGUCAggCG------UUGGGCCCGGGaGUag -5'
5204 5' -60.5 NC_001798.1 + 79976 0.67 0.667807
Target:  5'- cCGC-GUCCGCcg-CCGGGCCCcCGg- -3'
miRNA:   3'- -GCGuCAGGCGuugGGCCCGGGaGUag -5'
5204 5' -60.5 NC_001798.1 + 90231 0.67 0.667807
Target:  5'- gGCGuUCCGCGACCgGaaaGGCCagCUCGUCc -3'
miRNA:   3'- gCGUcAGGCGUUGGgC---CCGG--GAGUAG- -5'
5204 5' -60.5 NC_001798.1 + 117394 0.67 0.677687
Target:  5'- gGCAccGUCCGCAACCCcguuacggacauGGGCaaCCUCc-- -3'
miRNA:   3'- gCGU--CAGGCGUUGGG------------CCCG--GGAGuag -5'
5204 5' -60.5 NC_001798.1 + 150221 0.67 0.677687
Target:  5'- uGguG-CCGCGGgggacCCCGGGUCCUCc-- -3'
miRNA:   3'- gCguCaGGCGUU-----GGGCCCGGGAGuag -5'
5204 5' -60.5 NC_001798.1 + 39092 0.67 0.677687
Target:  5'- aCGCAGUCgCGCAugGCCUuGGCUgUCGa- -3'
miRNA:   3'- -GCGUCAG-GCGU--UGGGcCCGGgAGUag -5'
5204 5' -60.5 NC_001798.1 + 101733 0.66 0.687532
Target:  5'- -aCAGaUCgGCGGCCCGGGCCgU-GUCc -3'
miRNA:   3'- gcGUC-AGgCGUUGGGCCCGGgAgUAG- -5'
5204 5' -60.5 NC_001798.1 + 52864 0.66 0.697333
Target:  5'- aGCgAGUCCGUgcuggGGCCgCGGGUCCgcgCGUg -3'
miRNA:   3'- gCG-UCAGGCG-----UUGG-GCCCGGGa--GUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.