miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5204 5' -60.5 NC_001798.1 + 39092 0.67 0.677687
Target:  5'- aCGCAGUCgCGCAugGCCUuGGCUgUCGa- -3'
miRNA:   3'- -GCGUCAG-GCGU--UGGGcCCGGgAGUag -5'
5204 5' -60.5 NC_001798.1 + 90231 0.67 0.667807
Target:  5'- gGCGuUCCGCGACCgGaaaGGCCagCUCGUCc -3'
miRNA:   3'- gCGUcAGGCGUUGGgC---CCGG--GAGUAG- -5'
5204 5' -60.5 NC_001798.1 + 79976 0.67 0.667807
Target:  5'- cCGC-GUCCGCcg-CCGGGCCCcCGg- -3'
miRNA:   3'- -GCGuCAGGCGuugGGCCCGGGaGUag -5'
5204 5' -60.5 NC_001798.1 + 12129 0.67 0.667807
Target:  5'- aGUAGUuuGUauggggGACCUGGGCCCcCAc- -3'
miRNA:   3'- gCGUCAggCG------UUGGGCCCGGGaGUag -5'
5204 5' -60.5 NC_001798.1 + 150358 0.67 0.666818
Target:  5'- uGCGcGUCCaccggcacggcggGCGGCgCGGGCCCggccgCGUCc -3'
miRNA:   3'- gCGU-CAGG-------------CGUUGgGCCCGGGa----GUAG- -5'
5204 5' -60.5 NC_001798.1 + 106469 0.67 0.666818
Target:  5'- uGCAGUCugggcggCGCGGCCCGaGGUCCacuUCg -3'
miRNA:   3'- gCGUCAG-------GCGUUGGGC-CCGGGaguAG- -5'
5204 5' -60.5 NC_001798.1 + 150038 0.67 0.647973
Target:  5'- cCG-AGUCCGgGGCCCGGcgcggcgccGCCCUCu-- -3'
miRNA:   3'- -GCgUCAGGCgUUGGGCC---------CGGGAGuag -5'
5204 5' -60.5 NC_001798.1 + 74554 0.67 0.642011
Target:  5'- uGUGGUCCcCAggggggacggagaagGCUCGGGCCCggUCGUCc -3'
miRNA:   3'- gCGUCAGGcGU---------------UGGGCCCGGG--AGUAG- -5'
5204 5' -60.5 NC_001798.1 + 80902 0.67 0.638035
Target:  5'- gCGCAGcucCCGC-GCCUGucGGCgCUCAUCg -3'
miRNA:   3'- -GCGUCa--GGCGuUGGGC--CCGgGAGUAG- -5'
5204 5' -60.5 NC_001798.1 + 75566 0.67 0.638035
Target:  5'- aCGUGG-CCGCccaCCGGcCCCUCAUCc -3'
miRNA:   3'- -GCGUCaGGCGuugGGCCcGGGAGUAG- -5'
5204 5' -60.5 NC_001798.1 + 46897 0.67 0.636046
Target:  5'- uGCuGUCCGUuggacaaggaucGCCCuGGGCCCccacugacUCAUCg -3'
miRNA:   3'- gCGuCAGGCGu-----------UGGG-CCCGGG--------AGUAG- -5'
5204 5' -60.5 NC_001798.1 + 51169 0.67 0.632069
Target:  5'- aCGCGcGUCCGaGGCCCGGGCggcggcgcccccccgCCgggCGUCc -3'
miRNA:   3'- -GCGU-CAGGCgUUGGGCCCG---------------GGa--GUAG- -5'
5204 5' -60.5 NC_001798.1 + 135499 0.68 0.622127
Target:  5'- aCGCGGacgCCGCGcacggcGCgauccaggacgcccgCCGGGCCCUCGa- -3'
miRNA:   3'- -GCGUCa--GGCGU------UG---------------GGCCCGGGAGUag -5'
5204 5' -60.5 NC_001798.1 + 4131 0.68 0.618152
Target:  5'- cCGgGGcgCCGCccCCgGGGCCCUCGc- -3'
miRNA:   3'- -GCgUCa-GGCGuuGGgCCCGGGAGUag -5'
5204 5' -60.5 NC_001798.1 + 10488 0.68 0.618152
Target:  5'- cCGCuGUCCGUcuCCaGGGCCC-CGUa -3'
miRNA:   3'- -GCGuCAGGCGuuGGgCCCGGGaGUAg -5'
5204 5' -60.5 NC_001798.1 + 59788 0.68 0.618152
Target:  5'- aCGCGGg-CGguACCCGGGCCUggcCcUCg -3'
miRNA:   3'- -GCGUCagGCguUGGGCCCGGGa--GuAG- -5'
5204 5' -60.5 NC_001798.1 + 86831 0.68 0.618152
Target:  5'- uCGCuccGGcUCC-CGGCCCGGGCCCggCcgCg -3'
miRNA:   3'- -GCG---UC-AGGcGUUGGGCCCGGGa-GuaG- -5'
5204 5' -60.5 NC_001798.1 + 91515 0.68 0.618152
Target:  5'- gGCGGacCCGC-GCCCGGGuCCCUUc-- -3'
miRNA:   3'- gCGUCa-GGCGuUGGGCCC-GGGAGuag -5'
5204 5' -60.5 NC_001798.1 + 94984 0.68 0.608222
Target:  5'- uGCAGgcggCgGCcGCCUGGGCCCcgCAg- -3'
miRNA:   3'- gCGUCa---GgCGuUGGGCCCGGGa-GUag -5'
5204 5' -60.5 NC_001798.1 + 72240 0.68 0.598308
Target:  5'- aGCAG-CUGCGGCCCGcGGUCCa---- -3'
miRNA:   3'- gCGUCaGGCGUUGGGC-CCGGGaguag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.