miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5205 5' -63.5 NC_001798.1 + 85994 0.66 0.548341
Target:  5'- -cGCCgGGGCGCUgGCGCagGGggGUg -3'
miRNA:   3'- caCGGgCCCGCGG-UGCGggUCuuCGu -5'
5205 5' -63.5 NC_001798.1 + 154096 0.66 0.548341
Target:  5'- -cGCCgGGGCGCggccgGCGCCgGGGaccccGGCGg -3'
miRNA:   3'- caCGGgCCCGCGg----UGCGGgUCU-----UCGU- -5'
5205 5' -63.5 NC_001798.1 + 2994 0.66 0.538765
Target:  5'- -gGCCCgcGGGCcCCGgGCgCGGggGCGc -3'
miRNA:   3'- caCGGG--CCCGcGGUgCGgGUCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 29914 0.66 0.538765
Target:  5'- -gGUCgCGGGCGgUggGCUCGGggGCGg -3'
miRNA:   3'- caCGG-GCCCGCgGugCGGGUCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 75456 0.66 0.538765
Target:  5'- -gGCCgGGGUgGCCG-GCCCGGccGCGg -3'
miRNA:   3'- caCGGgCCCG-CGGUgCGGGUCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 89425 0.66 0.538765
Target:  5'- -cGgCCGGGCGCUuggGCGCCUccuugucGAGGCc -3'
miRNA:   3'- caCgGGCCCGCGG---UGCGGGu------CUUCGu -5'
5205 5' -63.5 NC_001798.1 + 109999 0.66 0.538765
Target:  5'- -cGCgCUGGGCGCacuacaACGCCCuGAuccGCGc -3'
miRNA:   3'- caCG-GGCCCGCGg-----UGCGGGuCUu--CGU- -5'
5205 5' -63.5 NC_001798.1 + 4073 0.66 0.538765
Target:  5'- -gGCCCGcGGuCGCCGCggggGUCCGGGccggGGCGg -3'
miRNA:   3'- caCGGGC-CC-GCGGUG----CGGGUCU----UCGU- -5'
5205 5' -63.5 NC_001798.1 + 26198 0.66 0.538765
Target:  5'- -cGgCCGGGcCGCCGC-CUCGGgcGCGg -3'
miRNA:   3'- caCgGGCCC-GCGGUGcGGGUCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 83530 0.66 0.53781
Target:  5'- -aGCCCGcGCauGCCgaGCGCCCGGAcguugucGGCGg -3'
miRNA:   3'- caCGGGCcCG--CGG--UGCGGGUCU-------UCGU- -5'
5205 5' -63.5 NC_001798.1 + 9989 0.66 0.53781
Target:  5'- -cGCCa-GGCGgUACGCCCAGGaacuuacGGCGc -3'
miRNA:   3'- caCGGgcCCGCgGUGCGGGUCU-------UCGU- -5'
5205 5' -63.5 NC_001798.1 + 40575 0.66 0.529246
Target:  5'- cGUGCgaGGGUGCgUAgGCCC-GAGGCGg -3'
miRNA:   3'- -CACGggCCCGCG-GUgCGGGuCUUCGU- -5'
5205 5' -63.5 NC_001798.1 + 111034 0.66 0.529246
Target:  5'- cGUGgCC-GGCGUacaaCACGCCCAGGAacGCGc -3'
miRNA:   3'- -CACgGGcCCGCG----GUGCGGGUCUU--CGU- -5'
5205 5' -63.5 NC_001798.1 + 125066 0.66 0.529246
Target:  5'- cUGCCCguGGGUgGCCACGUCCAccuuGGCc -3'
miRNA:   3'- cACGGG--CCCG-CGGUGCGGGUcu--UCGu -5'
5205 5' -63.5 NC_001798.1 + 2794 0.66 0.529246
Target:  5'- -gGCgCGGGCuccgcggcagcGCCGgGCCCAGGgccccGGCGa -3'
miRNA:   3'- caCGgGCCCG-----------CGGUgCGGGUCU-----UCGU- -5'
5205 5' -63.5 NC_001798.1 + 39764 0.66 0.529246
Target:  5'- gGUuCCCGGGgggaagccgacCGCCugGUCCcGAGGCGc -3'
miRNA:   3'- -CAcGGGCCC-----------GCGGugCGGGuCUUCGU- -5'
5205 5' -63.5 NC_001798.1 + 43020 0.66 0.529246
Target:  5'- -cGCCCGGggggaGCGCgGgGcCCCGGgcGCAa -3'
miRNA:   3'- caCGGGCC-----CGCGgUgC-GGGUCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 115802 0.66 0.529246
Target:  5'- cUGCCCcuGGCGCUGUGUCCGGuGGCGu -3'
miRNA:   3'- cACGGGc-CCGCGGUGCGGGUCuUCGU- -5'
5205 5' -63.5 NC_001798.1 + 154287 0.66 0.529246
Target:  5'- -aGCCCGGGcCGUguugCGgGCCCucuuaAGggGCGg -3'
miRNA:   3'- caCGGGCCC-GCG----GUgCGGG-----UCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 35577 0.66 0.526402
Target:  5'- -aGCCCGcGGCgcugcucggcugcgGCCGCGggcUCCGGggGCu -3'
miRNA:   3'- caCGGGC-CCG--------------CGGUGC---GGGUCuuCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.