miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5206 3' -60.1 NC_001798.1 + 146450 0.66 0.699769
Target:  5'- cGGAGCcCGCGgccgCAGCCgagcagcgCCGCGGGcUCc -3'
miRNA:   3'- -CUUCGcGCGCa---GUCGG--------GGCGUCCuAG- -5'
5206 3' -60.1 NC_001798.1 + 2283 0.66 0.699769
Target:  5'- -cAGCGCGCGgccagcgaGGCCagcgCGCGcGGGUCg -3'
miRNA:   3'- cuUCGCGCGCag------UCGGg---GCGU-CCUAG- -5'
5206 3' -60.1 NC_001798.1 + 73333 0.66 0.699769
Target:  5'- --cGCGCGcCGUCGacgcGCCCgGCGGGccgCg -3'
miRNA:   3'- cuuCGCGC-GCAGU----CGGGgCGUCCua-G- -5'
5206 3' -60.1 NC_001798.1 + 107470 0.66 0.689877
Target:  5'- -cGGCGCgGgGUCucuGCCCCGCaucgAGGAc- -3'
miRNA:   3'- cuUCGCG-CgCAGu--CGGGGCG----UCCUag -5'
5206 3' -60.1 NC_001798.1 + 23558 0.66 0.689877
Target:  5'- gGggGUGCccGCGagGGCCCCGgGGGcggCg -3'
miRNA:   3'- -CuuCGCG--CGCagUCGGGGCgUCCua-G- -5'
5206 3' -60.1 NC_001798.1 + 70592 0.67 0.679939
Target:  5'- -cGGUGCGCGUCcGCCagugugCCGUggaguGGAUCg -3'
miRNA:   3'- cuUCGCGCGCAGuCGG------GGCGu----CCUAG- -5'
5206 3' -60.1 NC_001798.1 + 3319 0.67 0.679939
Target:  5'- cGggGCG-GCGgcggCGGCgggcuuCCCGCGGGcGUCg -3'
miRNA:   3'- -CuuCGCgCGCa---GUCG------GGGCGUCC-UAG- -5'
5206 3' -60.1 NC_001798.1 + 43129 0.67 0.669963
Target:  5'- cGGGCGCGCGUCccgcGUCaCGCGGGcccaGUCg -3'
miRNA:   3'- cUUCGCGCGCAGu---CGGgGCGUCC----UAG- -5'
5206 3' -60.1 NC_001798.1 + 84925 0.67 0.669963
Target:  5'- -uAGCGCGCGUCuAGaCUUUcCAGGGUCu -3'
miRNA:   3'- cuUCGCGCGCAG-UC-GGGGcGUCCUAG- -5'
5206 3' -60.1 NC_001798.1 + 84 0.67 0.659957
Target:  5'- cGGGCGgGCGgcagggCAGCCCCGCGc---- -3'
miRNA:   3'- cUUCGCgCGCa-----GUCGGGGCGUccuag -5'
5206 3' -60.1 NC_001798.1 + 154422 0.67 0.659957
Target:  5'- cGGGCGgGCGgcagggCAGCCCCGCGc---- -3'
miRNA:   3'- cUUCGCgCGCa-----GUCGGGGCGUccuag -5'
5206 3' -60.1 NC_001798.1 + 79130 0.67 0.659957
Target:  5'- cGAGCGCGCGgaGGCCgUGgAGGAg- -3'
miRNA:   3'- cUUCGCGCGCagUCGGgGCgUCCUag -5'
5206 3' -60.1 NC_001798.1 + 86159 0.67 0.659957
Target:  5'- cGggGCGCGCaugcgcgacgCGGCCCCGCGu---- -3'
miRNA:   3'- -CuuCGCGCGca--------GUCGGGGCGUccuag -5'
5206 3' -60.1 NC_001798.1 + 5741 0.67 0.653943
Target:  5'- cGggGCcCGCGUCAucccgcgcuccGCCCCaaagggggcggggccGCAGGGUa -3'
miRNA:   3'- -CuuCGcGCGCAGU-----------CGGGG---------------CGUCCUAg -5'
5206 3' -60.1 NC_001798.1 + 74865 0.67 0.64993
Target:  5'- gGAGGUGgGgG-CAGUgCCGguGGGUCg -3'
miRNA:   3'- -CUUCGCgCgCaGUCGgGGCguCCUAG- -5'
5206 3' -60.1 NC_001798.1 + 15702 0.67 0.64993
Target:  5'- cGGGgGCG-GUCGGUUCCGCGcuuGGGUCg -3'
miRNA:   3'- cUUCgCGCgCAGUCGGGGCGU---CCUAG- -5'
5206 3' -60.1 NC_001798.1 + 26348 0.67 0.64993
Target:  5'- --cGUGCGCGgCGGCCCgGC-GGAg- -3'
miRNA:   3'- cuuCGCGCGCaGUCGGGgCGuCCUag -5'
5206 3' -60.1 NC_001798.1 + 139301 0.67 0.64993
Target:  5'- -uAGCGcCGCGUCGccGCCCCGCGuccGcAUCg -3'
miRNA:   3'- cuUCGC-GCGCAGU--CGGGGCGU---CcUAG- -5'
5206 3' -60.1 NC_001798.1 + 142172 0.67 0.64993
Target:  5'- aGGGaCGCGCG-CGGUUCugaCGCGGGGUCg -3'
miRNA:   3'- cUUC-GCGCGCaGUCGGG---GCGUCCUAG- -5'
5206 3' -60.1 NC_001798.1 + 28799 0.67 0.639889
Target:  5'- -cGGCGCGCGgguccUCcGCCgCCGCGGGcccgggccGUCg -3'
miRNA:   3'- cuUCGCGCGC-----AGuCGG-GGCGUCC--------UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.