miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5206 5' -58.3 NC_001798.1 + 24207 0.67 0.722932
Target:  5'- -cGGCCGCCGUGGccaugagccGCCGcuacgaccgCGCGCa- -3'
miRNA:   3'- uaCUGGCGGCGCU---------UGGCaa-------GCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 37167 0.67 0.722932
Target:  5'- --cGCCGCCugGCGGGCCGcUCgGCGCg- -3'
miRNA:   3'- uacUGGCGG--CGCUUGGCaAG-CGCGaa -5'
5206 5' -58.3 NC_001798.1 + 36224 0.67 0.719973
Target:  5'- -cGACCGCCGCcgcgcccgcguuucuGCCGcccgCGCGCUc -3'
miRNA:   3'- uaCUGGCGGCGcu-------------UGGCaa--GCGCGAa -5'
5206 5' -58.3 NC_001798.1 + 53629 0.67 0.717008
Target:  5'- -gGGCCGCCGCGGccaaguacGCCGccgcgguggcggggUUGCGCg- -3'
miRNA:   3'- uaCUGGCGGCGCU--------UGGCa-------------AGCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 24772 0.67 0.713045
Target:  5'- cUGGCUG-CGCGAGCUgcgGUUCGUGCg- -3'
miRNA:   3'- uACUGGCgGCGCUUGG---CAAGCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 2203 0.67 0.713045
Target:  5'- -aGGCCGCCGCGcggcgcagcgGGCCcgaggCGCGCa- -3'
miRNA:   3'- uaCUGGCGGCGC----------UUGGcaa--GCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 10879 0.68 0.693075
Target:  5'- -cGGCC-CCGCGAGCCauGUUCGgGUg- -3'
miRNA:   3'- uaCUGGcGGCGCUUGG--CAAGCgCGaa -5'
5206 5' -58.3 NC_001798.1 + 85357 0.68 0.693075
Target:  5'- -gGGCCcuucGCCGCGGcguCCGUcgacaccuUCGCGCUg -3'
miRNA:   3'- uaCUGG----CGGCGCUu--GGCA--------AGCGCGAa -5'
5206 5' -58.3 NC_001798.1 + 27253 0.68 0.683011
Target:  5'- -aGGCgGCCGCGGGaccgcagccCCGUggCGCGCg- -3'
miRNA:   3'- uaCUGgCGGCGCUU---------GGCAa-GCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 25839 0.68 0.679983
Target:  5'- -cGACCGCCGCcucaucgucgucaacGCCGUgCGCGCc- -3'
miRNA:   3'- uaCUGGCGGCGcu-------------UGGCAaGCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 70210 0.68 0.672904
Target:  5'- -cGGCCGCCcucccccucgaGCGAGCCGgcgggcaGCGCg- -3'
miRNA:   3'- uaCUGGCGG-----------CGCUUGGCaag----CGCGaa -5'
5206 5' -58.3 NC_001798.1 + 42208 0.68 0.672904
Target:  5'- aGUGGaagCGCCGCGggUCGgcgUGCGCg- -3'
miRNA:   3'- -UACUg--GCGGCGCuuGGCaa-GCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 137942 0.68 0.662765
Target:  5'- -cGGCCGCC-CGGuCCGccgCGCGCUg -3'
miRNA:   3'- uaCUGGCGGcGCUuGGCaa-GCGCGAa -5'
5206 5' -58.3 NC_001798.1 + 131014 0.68 0.662765
Target:  5'- -gGGCCGCCGCcaggcgacGGGCCGcauccagCGCGCg- -3'
miRNA:   3'- uaCUGGCGGCG--------CUUGGCaa-----GCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 43249 0.68 0.662765
Target:  5'- cAUGAgaGCCGCGAucGCCGggggcgUCGUGCc- -3'
miRNA:   3'- -UACUggCGGCGCU--UGGCa-----AGCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 4604 0.68 0.66175
Target:  5'- -gGGCCGCUucuucuuGCGcGCCG-UCGCGCUc -3'
miRNA:   3'- uaCUGGCGG-------CGCuUGGCaAGCGCGAa -5'
5206 5' -58.3 NC_001798.1 + 75258 0.68 0.652601
Target:  5'- uGUGGCCGCCacgGCGGuCCGgcucgcggCGCGCg- -3'
miRNA:   3'- -UACUGGCGG---CGCUuGGCaa------GCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 95117 0.69 0.642422
Target:  5'- cGUGAUgGCCGCGcGCCcgauggUCGUGCUg -3'
miRNA:   3'- -UACUGgCGGCGCuUGGca----AGCGCGAa -5'
5206 5' -58.3 NC_001798.1 + 28815 0.69 0.632234
Target:  5'- --cGCCGCCGCGGGcCCGggccgUCGgGCg- -3'
miRNA:   3'- uacUGGCGGCGCUU-GGCa----AGCgCGaa -5'
5206 5' -58.3 NC_001798.1 + 79764 0.69 0.632234
Target:  5'- cUGACCGUCGUGAACCGgcuccaGCUg -3'
miRNA:   3'- uACUGGCGGCGCUUGGCaagcg-CGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.