miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5209 5' -61.3 NC_001798.1 + 98595 0.66 0.731446
Target:  5'- gCGGcCCCGGCGgcCCCGgcGGcCcCCCGCg -3'
miRNA:   3'- aGCCaGGGCUGC--GGGC--UCaGaGGGUG- -5'
5209 5' -61.3 NC_001798.1 + 82323 0.66 0.731446
Target:  5'- cCGGUugCCCGcCGCCCcccaccccAGUCaCCCGCg -3'
miRNA:   3'- aGCCA--GGGCuGCGGGc-------UCAGaGGGUG- -5'
5209 5' -61.3 NC_001798.1 + 103727 0.66 0.731446
Target:  5'- gCGuGUCcgCCGACGUCCGGGcCgggacuaaagCCCGCg -3'
miRNA:   3'- aGC-CAG--GGCUGCGGGCUCaGa---------GGGUG- -5'
5209 5' -61.3 NC_001798.1 + 89454 0.66 0.731446
Target:  5'- -aGGcCCCGAaacCGCCCcuGGGUgUCCgGCa -3'
miRNA:   3'- agCCaGGGCU---GCGGG--CUCAgAGGgUG- -5'
5209 5' -61.3 NC_001798.1 + 42645 0.66 0.731446
Target:  5'- gUCGuGUCCaUGGgGUCCGuGUCcuccUCCCACu -3'
miRNA:   3'- -AGC-CAGG-GCUgCGGGCuCAG----AGGGUG- -5'
5209 5' -61.3 NC_001798.1 + 102503 0.66 0.722027
Target:  5'- aCGGg-CCGGCGCCgGGGUgUCCg-- -3'
miRNA:   3'- aGCCagGGCUGCGGgCUCAgAGGgug -5'
5209 5' -61.3 NC_001798.1 + 108382 0.66 0.722027
Target:  5'- gUUGGUCaCC-ACGgCCGAGUUUCCUc- -3'
miRNA:   3'- -AGCCAG-GGcUGCgGGCUCAGAGGGug -5'
5209 5' -61.3 NC_001798.1 + 24443 0.66 0.722027
Target:  5'- gCGGUgCCCGccggcuacgGCGCCgCGGGggugCUCgCCGCc -3'
miRNA:   3'- aGCCA-GGGC---------UGCGG-GCUCa---GAG-GGUG- -5'
5209 5' -61.3 NC_001798.1 + 23924 0.66 0.702985
Target:  5'- cUCGGgcgcCCCGGCGCCCGuGUgggCgCCGa -3'
miRNA:   3'- -AGCCa---GGGCUGCGGGCuCAga-G-GGUg -5'
5209 5' -61.3 NC_001798.1 + 130226 0.66 0.702985
Target:  5'- -gGGuUUCCGcguaGCCCGGGUCUCCgGg -3'
miRNA:   3'- agCC-AGGGCug--CGGGCUCAGAGGgUg -5'
5209 5' -61.3 NC_001798.1 + 91826 0.66 0.702985
Target:  5'- gCGGggCCCGACGCCgccc-CUCCCAg -3'
miRNA:   3'- aGCCa-GGGCUGCGGgcucaGAGGGUg -5'
5209 5' -61.3 NC_001798.1 + 111426 0.66 0.702985
Target:  5'- gCGGcCCCGAgaaaCGCCCGcGgagCcCCCACc -3'
miRNA:   3'- aGCCaGGGCU----GCGGGCuCa--GaGGGUG- -5'
5209 5' -61.3 NC_001798.1 + 133456 0.66 0.693379
Target:  5'- gCGGUUaagcgcguggCCGACGCCCuGAGcggCUgcccCCCGCg -3'
miRNA:   3'- aGCCAG----------GGCUGCGGG-CUCa--GA----GGGUG- -5'
5209 5' -61.3 NC_001798.1 + 23800 0.66 0.693379
Target:  5'- -gGGagCCGugGCCCGGGgccggCccCCCGCc -3'
miRNA:   3'- agCCagGGCugCGGGCUCa----Ga-GGGUG- -5'
5209 5' -61.3 NC_001798.1 + 43134 0.66 0.683726
Target:  5'- gCGcGUCCCGcgucacgcGgGCCC-AGUCgUCCCGCg -3'
miRNA:   3'- aGC-CAGGGC--------UgCGGGcUCAG-AGGGUG- -5'
5209 5' -61.3 NC_001798.1 + 134302 0.66 0.683726
Target:  5'- uUC-GUCCCGcuGCGCCUGGG-CUgggaCCCGCa -3'
miRNA:   3'- -AGcCAGGGC--UGCGGGCUCaGA----GGGUG- -5'
5209 5' -61.3 NC_001798.1 + 147927 0.67 0.674034
Target:  5'- gUCGGgCCCGuACGCCCaccgCcCCCACg -3'
miRNA:   3'- -AGCCaGGGC-UGCGGGcucaGaGGGUG- -5'
5209 5' -61.3 NC_001798.1 + 108571 0.67 0.674034
Target:  5'- gCGGUCCCGG-GCCUGGGUaacaUUCGCg -3'
miRNA:   3'- aGCCAGGGCUgCGGGCUCAga--GGGUG- -5'
5209 5' -61.3 NC_001798.1 + 58292 0.67 0.674034
Target:  5'- -aGGUCCCGGgGCgCGAGggUCUgACa -3'
miRNA:   3'- agCCAGGGCUgCGgGCUCagAGGgUG- -5'
5209 5' -61.3 NC_001798.1 + 104456 0.67 0.664311
Target:  5'- gCGGUcgCCCGcagcaGCGUCUG-GUCcUCCCACa -3'
miRNA:   3'- aGCCA--GGGC-----UGCGGGCuCAG-AGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.