miRNA display CGI


Results 1 - 20 of 423 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5211 3' -68.4 NC_001798.1 + 149153 0.66 0.424951
Target:  5'- cUGC-CCCCgaGGCGccucGGCCGGugGuCCGg -3'
miRNA:   3'- aGCGcGGGG--CCGC----CCGGCCugC-GGCg -5'
5211 3' -68.4 NC_001798.1 + 42214 0.66 0.424951
Target:  5'- -aGCGCC---GCGGGUCGGcguGCGCgGCg -3'
miRNA:   3'- agCGCGGggcCGCCCGGCC---UGCGgCG- -5'
5211 3' -68.4 NC_001798.1 + 69229 0.66 0.424951
Target:  5'- -aGCGCCCCGGCcGGCU-----CCGCg -3'
miRNA:   3'- agCGCGGGGCCGcCCGGccugcGGCG- -5'
5211 3' -68.4 NC_001798.1 + 133045 0.66 0.424951
Target:  5'- gUCGCGCUCauGCGcGGCCucaacagccuGGuCGgCCGCa -3'
miRNA:   3'- -AGCGCGGGgcCGC-CCGG----------CCuGC-GGCG- -5'
5211 3' -68.4 NC_001798.1 + 3325 0.66 0.424951
Target:  5'- -gGCGgCggCGGCGGGCuucccgCGGGCGUCGUc -3'
miRNA:   3'- agCGCgGg-GCCGCCCG------GCCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 58685 0.66 0.424951
Target:  5'- aC-CGCCgCCGucaGGGCCGcGGCGgCGCg -3'
miRNA:   3'- aGcGCGG-GGCcg-CCCGGC-CUGCgGCG- -5'
5211 3' -68.4 NC_001798.1 + 78038 0.66 0.424951
Target:  5'- aCGCcgaGCCCCuGGCGcGGCUGcuGCGCauCGCg -3'
miRNA:   3'- aGCG---CGGGG-CCGC-CCGGCc-UGCG--GCG- -5'
5211 3' -68.4 NC_001798.1 + 102640 0.66 0.424951
Target:  5'- cCGuCGCCgggCGGCggagGGGCCgGGGCGCC-Cg -3'
miRNA:   3'- aGC-GCGGg--GCCG----CCCGG-CCUGCGGcG- -5'
5211 3' -68.4 NC_001798.1 + 95062 0.66 0.424145
Target:  5'- aCGCGCacCCCGGCGc-CUGGACGUccauguuCGCg -3'
miRNA:   3'- aGCGCG--GGGCCGCccGGCCUGCG-------GCG- -5'
5211 3' -68.4 NC_001798.1 + 74653 0.66 0.42334
Target:  5'- -gGCcCCCCGGgGGGCCucGGGCccacccgacacaCCGCa -3'
miRNA:   3'- agCGcGGGGCCgCCCGG--CCUGc-----------GGCG- -5'
5211 3' -68.4 NC_001798.1 + 73694 0.66 0.420128
Target:  5'- aCGCccggcccauaaacagGCCCCgcucguGGCGGGCgCGGcACacaugauuccgGCCGCg -3'
miRNA:   3'- aGCG---------------CGGGG------CCGCCCG-GCC-UG-----------CGGCG- -5'
5211 3' -68.4 NC_001798.1 + 61473 0.66 0.417729
Target:  5'- cCGgGCCCCGGaGGGCUacuuuacccccauCGCCGUg -3'
miRNA:   3'- aGCgCGGGGCCgCCCGGccu----------GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 28582 0.66 0.416932
Target:  5'- gUGCGCCauCUGGUGGcCUGGGagacgGCCGCg -3'
miRNA:   3'- aGCGCGG--GGCCGCCcGGCCUg----CGGCG- -5'
5211 3' -68.4 NC_001798.1 + 53127 0.66 0.416932
Target:  5'- cUGCGgCUgGcGCGGuGCCuGACGCCGg -3'
miRNA:   3'- aGCGCgGGgC-CGCC-CGGcCUGCGGCg -5'
5211 3' -68.4 NC_001798.1 + 79135 0.66 0.416932
Target:  5'- gCGCggagGCCgUGGaGGaGCUGGGCGCgCGCg -3'
miRNA:   3'- aGCG----CGGgGCCgCC-CGGCCUGCG-GCG- -5'
5211 3' -68.4 NC_001798.1 + 113288 0.66 0.416932
Target:  5'- gUCGU-UCCUGGUccucaagccgcuGGaGCUGGugGCCGCg -3'
miRNA:   3'- -AGCGcGGGGCCG------------CC-CGGCCugCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 148083 0.66 0.416932
Target:  5'- aCGgGCC--GG-GGGCCGGG-GCCGCu -3'
miRNA:   3'- aGCgCGGggCCgCCCGGCCUgCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 60966 0.66 0.416932
Target:  5'- cCGgGCCCggaGGCGcGGCCGuuugUGUCGCa -3'
miRNA:   3'- aGCgCGGGg--CCGC-CCGGCcu--GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 83887 0.66 0.416932
Target:  5'- cCG-GCCCgGGCGcuCCGGaagagugguGCGCCGCc -3'
miRNA:   3'- aGCgCGGGgCCGCccGGCC---------UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 20356 0.66 0.416932
Target:  5'- -gGCGCugCCgGGCGGGUUcgGGGCgGCaCGCa -3'
miRNA:   3'- agCGCG--GGgCCGCCCGG--CCUG-CG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.