miRNA display CGI


Results 81 - 100 of 423 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5211 3' -68.4 NC_001798.1 + 26313 0.66 0.409005
Target:  5'- cUGCGgCCCGucuacguggcGCuGGGgCGcGACGCCGUg -3'
miRNA:   3'- aGCGCgGGGC----------CG-CCCgGC-CUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 38415 0.67 0.363478
Target:  5'- aCGCGCUaugaaGCGGGCCGGGCcgggGCCcCa -3'
miRNA:   3'- aGCGCGGggc--CGCCCGGCCUG----CGGcG- -5'
5211 3' -68.4 NC_001798.1 + 153302 0.67 0.363478
Target:  5'- uUCGUggGCCCgGGCucGGGCuCGGGC-CCGa -3'
miRNA:   3'- -AGCG--CGGGgCCG--CCCG-GCCUGcGGCg -5'
5211 3' -68.4 NC_001798.1 + 92952 0.67 0.363478
Target:  5'- cCGUGgCCCuGCGuGCCcggaacguGGACGCCGUg -3'
miRNA:   3'- aGCGCgGGGcCGCcCGG--------CCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 88659 0.67 0.363478
Target:  5'- gUCGCccaugGCCaCCaGGCccgcGGCCGuGAgGCCGCg -3'
miRNA:   3'- -AGCG-----CGG-GG-CCGc---CCGGC-CUgCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 83615 0.67 0.363478
Target:  5'- gUCGCGCCgUaagaauCGGGCCGGAgGCgggaGCg -3'
miRNA:   3'- -AGCGCGGgGcc----GCCCGGCCUgCGg---CG- -5'
5211 3' -68.4 NC_001798.1 + 62285 0.67 0.363478
Target:  5'- -gGCGgCCCGGCGGGa-GcGCGCCa- -3'
miRNA:   3'- agCGCgGGGCCGCCCggCcUGCGGcg -5'
5211 3' -68.4 NC_001798.1 + 36022 0.67 0.363478
Target:  5'- cCGCGCCuuGGCuguuugggGGGUggcggCGGugGUCGg -3'
miRNA:   3'- aGCGCGGggCCG--------CCCG-----GCCugCGGCg -5'
5211 3' -68.4 NC_001798.1 + 31245 0.67 0.363478
Target:  5'- -gGCGCCCCGuuGCGGGCgGGG-GUgGg -3'
miRNA:   3'- agCGCGGGGC--CGCCCGgCCUgCGgCg -5'
5211 3' -68.4 NC_001798.1 + 53709 0.67 0.363478
Target:  5'- aUGCGCCCCGcagacccgaGCcGGCCgagcacGGACaCCGCa -3'
miRNA:   3'- aGCGCGGGGC---------CGcCCGG------CCUGcGGCG- -5'
5211 3' -68.4 NC_001798.1 + 52316 0.67 0.369342
Target:  5'- uUCGCGCCCUgccccugGGCagccccgGGGUCGuGGCgGCCGa -3'
miRNA:   3'- -AGCGCGGGG-------CCG-------CCCGGC-CUG-CGGCg -5'
5211 3' -68.4 NC_001798.1 + 93615 0.67 0.370079
Target:  5'- -aGCGCUgcgaCGGCGGagucaucGUCGGGCGCCa- -3'
miRNA:   3'- agCGCGGg---GCCGCC-------CGGCCUGCGGcg -5'
5211 3' -68.4 NC_001798.1 + 40816 0.67 0.36275
Target:  5'- -aGCGCCCCcugggggccgcuGGUuccgcguuuuuggGGGCCGaGcccCGCCGCa -3'
miRNA:   3'- agCGCGGGG------------CCG-------------CCCGGC-Cu--GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 113338 0.67 0.370818
Target:  5'- aCGgGUggaCCGGaCGGGCgGuGGCGCCGg -3'
miRNA:   3'- aGCgCGg--GGCC-GCCCGgC-CUGCGGCg -5'
5211 3' -68.4 NC_001798.1 + 109061 0.67 0.370818
Target:  5'- aUCGCGUcuuuguCCUGG-GGGCCccGACGcCCGCc -3'
miRNA:   3'- -AGCGCG------GGGCCgCCCGGc-CUGC-GGCG- -5'
5211 3' -68.4 NC_001798.1 + 105416 0.67 0.370818
Target:  5'- cCGCGgCCgCGGUGcGCUGGGCcugcagcacuGCCGCc -3'
miRNA:   3'- aGCGCgGG-GCCGCcCGGCCUG----------CGGCG- -5'
5211 3' -68.4 NC_001798.1 + 51177 0.67 0.370818
Target:  5'- cCGagGCCCgGGCGGcggcgcccccccGCCGGGCGUCc- -3'
miRNA:   3'- aGCg-CGGGgCCGCC------------CGGCCUGCGGcg -5'
5211 3' -68.4 NC_001798.1 + 30429 0.67 0.370818
Target:  5'- aCGC-CCCCGGCccggcccccGGCCGaGCGCCa- -3'
miRNA:   3'- aGCGcGGGGCCGc--------CCGGCcUGCGGcg -5'
5211 3' -68.4 NC_001798.1 + 31535 0.67 0.370818
Target:  5'- cUCGgGCCCCGGgGGG--GGAgGuCUGCc -3'
miRNA:   3'- -AGCgCGGGGCCgCCCggCCUgC-GGCG- -5'
5211 3' -68.4 NC_001798.1 + 28176 0.67 0.370818
Target:  5'- gCGaacaGCCCCccgagcgagGGCGGggggaaggcGCCGGAggccccgcaCGCCGCg -3'
miRNA:   3'- aGCg---CGGGG---------CCGCC---------CGGCCU---------GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.