Results 1 - 20 of 423 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5211 | 3' | -68.4 | NC_001798.1 | + | 80785 | 1.09 | 0.000305 |
Target: 5'- cUCGCGCCCCGGCGGGCCGGACGCCGCc -3' miRNA: 3'- -AGCGCGGGGCCGCCCGGCCUGCGGCG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 2474 | 0.85 | 0.019737 |
Target: 5'- -gGgGCCCuCGGCGGGCCGGcgggucaGCGCCGCg -3' miRNA: 3'- agCgCGGG-GCCGCCCGGCC-------UGCGGCG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 37164 | 0.84 | 0.021334 |
Target: 5'- cCGCGCCgCCuGGCGGGCCGcucggcgcgccaGGCGCCGCg -3' miRNA: 3'- aGCGCGG-GG-CCGCCCGGC------------CUGCGGCG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 2257 | 0.83 | 0.024795 |
Target: 5'- gCGCGCCgCCGGgGGGCgGGGCGgCGCa -3' miRNA: 3'- aGCGCGG-GGCCgCCCGgCCUGCgGCG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 67615 | 0.83 | 0.027404 |
Target: 5'- cCGCGCUCCGGCGaGGgCGGAUGCgGCa -3' miRNA: 3'- aGCGCGGGGCCGC-CCgGCCUGCGgCG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 3884 | 0.82 | 0.031834 |
Target: 5'- aCGCGCCCCGG-GGGCgGGGgGCCGg -3' miRNA: 3'- aGCGCGGGGCCgCCCGgCCUgCGGCg -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 29011 | 0.81 | 0.035171 |
Target: 5'- gCGCGCCgCCGcGCGGGcCCGGACuCCGCc -3' miRNA: 3'- aGCGCGG-GGC-CGCCC-GGCCUGcGGCG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 23719 | 0.81 | 0.036966 |
Target: 5'- -gGCgGCCCCGGCGGGUCgagcuGGACGCCGa -3' miRNA: 3'- agCG-CGGGGCCGCCCGG-----CCUGCGGCg -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 26179 | 0.81 | 0.036057 |
Target: 5'- cCGUGCuCCCGGCGcuggacGGCCGGGcCGCCGCc -3' miRNA: 3'- aGCGCG-GGGCCGC------CCGGCCU-GCGGCG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 40244 | 0.81 | 0.035171 |
Target: 5'- -aGCGCCCa-GUGGGCCGGugGCUGCc -3' miRNA: 3'- agCGCGGGgcCGCCCGGCCugCGGCG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 39886 | 0.8 | 0.040728 |
Target: 5'- -gGCGUCCUcggGGCGGGCCGGgggaccuuugggaACGCCGCg -3' miRNA: 3'- agCGCGGGG---CCGCCCGGCC-------------UGCGGCG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 32048 | 0.79 | 0.048561 |
Target: 5'- cCGCucGCCCCGGCGucCgCGGGCGCCGCg -3' miRNA: 3'- aGCG--CGGGGCCGCccG-GCCUGCGGCG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 132140 | 0.79 | 0.056311 |
Target: 5'- cUGCGCCgccgggggCCGGCGGGCgGGGCGCCc- -3' miRNA: 3'- aGCGCGG--------GGCCGCCCGgCCUGCGGcg -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 4110 | 0.78 | 0.059151 |
Target: 5'- cUCG-GCCCUgGGCGGGCUcggccgGGGCGCCGCc -3' miRNA: 3'- -AGCgCGGGG-CCGCCCGG------CCUGCGGCG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 24577 | 0.78 | 0.065253 |
Target: 5'- gCGCGCggaGGCGGGCCGcGugGCCGUg -3' miRNA: 3'- aGCGCGgggCCGCCCGGC-CugCGGCG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 27954 | 0.77 | 0.07196 |
Target: 5'- cCGCGCCCCGGCGcuccaGCCG--UGCCGCg -3' miRNA: 3'- aGCGCGGGGCCGCc----CGGCcuGCGGCG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 23839 | 0.77 | 0.070224 |
Target: 5'- gCGUGCUguaCGGCGGGCUGGGCgacaGCCGCc -3' miRNA: 3'- aGCGCGGg--GCCGCCCGGCCUG----CGGCG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 2999 | 0.77 | 0.078751 |
Target: 5'- gCGgGCCCCgggcgcgggggcgcGGCGGGCCGGGCuCCGg -3' miRNA: 3'- aGCgCGGGG--------------CCGCCCGGCCUGcGGCg -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 25332 | 0.77 | 0.073738 |
Target: 5'- cUGCGCCCC-GCGGGCC-GugGCCGa -3' miRNA: 3'- aGCGCGGGGcCGCCCGGcCugCGGCg -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 138155 | 0.76 | 0.081279 |
Target: 5'- gUCGCGCCCCcggguccugggGGCGcgacccgcGGCCGG-UGCCGCc -3' miRNA: 3'- -AGCGCGGGG-----------CCGC--------CCGGCCuGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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