miRNA display CGI


Results 81 - 100 of 423 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5211 3' -68.4 NC_001798.1 + 98551 0.73 0.134427
Target:  5'- uUUGCGCgCUGGUcgugggGGcGCUGGugGCCGCg -3'
miRNA:   3'- -AGCGCGgGGCCG------CC-CGGCCugCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 24476 0.73 0.14766
Target:  5'- cUCGcCGCCCUGG-GGcGCCuGAgCGCCGCg -3'
miRNA:   3'- -AGC-GCGGGGCCgCC-CGGcCU-GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 25074 0.72 0.173696
Target:  5'- cCcCGCCCCGGCcaGGgcgccGCCGGGCGgCGCc -3'
miRNA:   3'- aGcGCGGGGCCG--CC-----CGGCCUGCgGCG- -5'
5211 3' -68.4 NC_001798.1 + 93141 0.72 0.16974
Target:  5'- -aGCGCCUggccucggugaUGGCGGGC--GACGCCGCc -3'
miRNA:   3'- agCGCGGG-----------GCCGCCCGgcCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 54725 0.72 0.173696
Target:  5'- gUGCGgaCCUGG-GGGCCGGACGCgGa -3'
miRNA:   3'- aGCGCg-GGGCCgCCCGGCCUGCGgCg -5'
5211 3' -68.4 NC_001798.1 + 153671 0.72 0.173696
Target:  5'- gCGCGUCCgCgGGCGGGgacgCGGGgGCCGCc -3'
miRNA:   3'- aGCGCGGG-G-CCGCCCg---GCCUgCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 1380 0.72 0.16207
Target:  5'- gUCGCGCCCCaGCgccacguagacGGGCCGcaGCGgCGCg -3'
miRNA:   3'- -AGCGCGGGGcCG-----------CCCGGCc-UGCgGCG- -5'
5211 3' -68.4 NC_001798.1 + 121780 0.72 0.16207
Target:  5'- -gGCGUCCuCGGUcucgggcgGGGCCGGGCcgGCCGUu -3'
miRNA:   3'- agCGCGGG-GCCG--------CCCGGCCUG--CGGCG- -5'
5211 3' -68.4 NC_001798.1 + 117760 0.72 0.177326
Target:  5'- gCGCGCCCuucgCGGCcacGGCCaacccguGGGCGUCGCa -3'
miRNA:   3'- aGCGCGGG----GCCGc--CCGG-------CCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 3259 0.72 0.173297
Target:  5'- -gGCGCCguagCCGGCGGGCaccgcgcgcucguCGGccggcgACGCCGCc -3'
miRNA:   3'- agCGCGG----GGCCGCCCG-------------GCC------UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 72318 0.72 0.173696
Target:  5'- --aCGCCCUGGCGGcCCGGGgggUGCUGCa -3'
miRNA:   3'- agcGCGGGGCCGCCcGGCCU---GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 82967 0.72 0.173696
Target:  5'- -aGCGCCCUGGCGGuuuugauCCGcGcAUGCCGCc -3'
miRNA:   3'- agCGCGGGGCCGCCc------GGC-C-UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 86828 0.72 0.173696
Target:  5'- cCGuCGCUCCGGCucccGGcCCGGGCccgGCCGCg -3'
miRNA:   3'- aGC-GCGGGGCCGc---CC-GGCCUG---CGGCG- -5'
5211 3' -68.4 NC_001798.1 + 39538 0.72 0.173696
Target:  5'- cCGCGCCUCgccgugGGUGGcGCCGGG-GCCGUc -3'
miRNA:   3'- aGCGCGGGG------CCGCC-CGGCCUgCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 139936 0.72 0.16207
Target:  5'- gCGgGCCCUGGCGGcGCacggGGGCGaagaCGCg -3'
miRNA:   3'- aGCgCGGGGCCGCC-CGg---CCUGCg---GCG- -5'
5211 3' -68.4 NC_001798.1 + 21733 0.72 0.16974
Target:  5'- gUGUGCCCCuggugcGGCGGcGaCCgGGACGCCGg -3'
miRNA:   3'- aGCGCGGGG------CCGCC-C-GG-CCUGCGGCg -5'
5211 3' -68.4 NC_001798.1 + 43134 0.72 0.165865
Target:  5'- gCGCGUCCCGcgucacGCGGGCCcagucgucccGCGCCGCc -3'
miRNA:   3'- aGCGCGGGGC------CGCCCGGcc--------UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 129350 0.72 0.16974
Target:  5'- -aGCGCCCgccgggccUGGCGGGgcccCCGGAC-CCGCc -3'
miRNA:   3'- agCGCGGG--------GCCGCCC----GGCCUGcGGCG- -5'
5211 3' -68.4 NC_001798.1 + 31475 0.72 0.16974
Target:  5'- gCGcCGCCCC-GCGGGCCccGgGCCGCu -3'
miRNA:   3'- aGC-GCGGGGcCGCCCGGccUgCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 135484 0.72 0.165865
Target:  5'- aCGUGgaCCCCGG-GGaCgCGGACGCCGCg -3'
miRNA:   3'- aGCGC--GGGGCCgCCcG-GCCUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.