miRNA display CGI


Results 1 - 20 of 423 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5211 3' -68.4 NC_001798.1 + 80785 1.09 0.000305
Target:  5'- cUCGCGCCCCGGCGGGCCGGACGCCGCc -3'
miRNA:   3'- -AGCGCGGGGCCGCCCGGCCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 2474 0.85 0.019737
Target:  5'- -gGgGCCCuCGGCGGGCCGGcgggucaGCGCCGCg -3'
miRNA:   3'- agCgCGGG-GCCGCCCGGCC-------UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 37164 0.84 0.021334
Target:  5'- cCGCGCCgCCuGGCGGGCCGcucggcgcgccaGGCGCCGCg -3'
miRNA:   3'- aGCGCGG-GG-CCGCCCGGC------------CUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 2257 0.83 0.024795
Target:  5'- gCGCGCCgCCGGgGGGCgGGGCGgCGCa -3'
miRNA:   3'- aGCGCGG-GGCCgCCCGgCCUGCgGCG- -5'
5211 3' -68.4 NC_001798.1 + 67615 0.83 0.027404
Target:  5'- cCGCGCUCCGGCGaGGgCGGAUGCgGCa -3'
miRNA:   3'- aGCGCGGGGCCGC-CCgGCCUGCGgCG- -5'
5211 3' -68.4 NC_001798.1 + 3884 0.82 0.031834
Target:  5'- aCGCGCCCCGG-GGGCgGGGgGCCGg -3'
miRNA:   3'- aGCGCGGGGCCgCCCGgCCUgCGGCg -5'
5211 3' -68.4 NC_001798.1 + 40244 0.81 0.035171
Target:  5'- -aGCGCCCa-GUGGGCCGGugGCUGCc -3'
miRNA:   3'- agCGCGGGgcCGCCCGGCCugCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 29011 0.81 0.035171
Target:  5'- gCGCGCCgCCGcGCGGGcCCGGACuCCGCc -3'
miRNA:   3'- aGCGCGG-GGC-CGCCC-GGCCUGcGGCG- -5'
5211 3' -68.4 NC_001798.1 + 26179 0.81 0.036057
Target:  5'- cCGUGCuCCCGGCGcuggacGGCCGGGcCGCCGCc -3'
miRNA:   3'- aGCGCG-GGGCCGC------CCGGCCU-GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 23719 0.81 0.036966
Target:  5'- -gGCgGCCCCGGCGGGUCgagcuGGACGCCGa -3'
miRNA:   3'- agCG-CGGGGCCGCCCGG-----CCUGCGGCg -5'
5211 3' -68.4 NC_001798.1 + 39886 0.8 0.040728
Target:  5'- -gGCGUCCUcggGGCGGGCCGGgggaccuuugggaACGCCGCg -3'
miRNA:   3'- agCGCGGGG---CCGCCCGGCC-------------UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 32048 0.79 0.048561
Target:  5'- cCGCucGCCCCGGCGucCgCGGGCGCCGCg -3'
miRNA:   3'- aGCG--CGGGGCCGCccG-GCCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 132140 0.79 0.056311
Target:  5'- cUGCGCCgccgggggCCGGCGGGCgGGGCGCCc- -3'
miRNA:   3'- aGCGCGG--------GGCCGCCCGgCCUGCGGcg -5'
5211 3' -68.4 NC_001798.1 + 4110 0.78 0.059151
Target:  5'- cUCG-GCCCUgGGCGGGCUcggccgGGGCGCCGCc -3'
miRNA:   3'- -AGCgCGGGG-CCGCCCGG------CCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 24577 0.78 0.065253
Target:  5'- gCGCGCggaGGCGGGCCGcGugGCCGUg -3'
miRNA:   3'- aGCGCGgggCCGCCCGGC-CugCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 23839 0.77 0.070224
Target:  5'- gCGUGCUguaCGGCGGGCUGGGCgacaGCCGCc -3'
miRNA:   3'- aGCGCGGg--GCCGCCCGGCCUG----CGGCG- -5'
5211 3' -68.4 NC_001798.1 + 27954 0.77 0.07196
Target:  5'- cCGCGCCCCGGCGcuccaGCCG--UGCCGCg -3'
miRNA:   3'- aGCGCGGGGCCGCc----CGGCcuGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 25332 0.77 0.073738
Target:  5'- cUGCGCCCC-GCGGGCC-GugGCCGa -3'
miRNA:   3'- aGCGCGGGGcCGCCCGGcCugCGGCg -5'
5211 3' -68.4 NC_001798.1 + 2999 0.77 0.078751
Target:  5'- gCGgGCCCCgggcgcgggggcgcGGCGGGCCGGGCuCCGg -3'
miRNA:   3'- aGCgCGGGG--------------CCGCCCGGCCUGcGGCg -5'
5211 3' -68.4 NC_001798.1 + 138155 0.76 0.081279
Target:  5'- gUCGCGCCCCcggguccugggGGCGcgacccgcGGCCGG-UGCCGCc -3'
miRNA:   3'- -AGCGCGGGG-----------CCGC--------CCGGCCuGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.