miRNA display CGI


Results 21 - 40 of 423 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5211 3' -68.4 NC_001798.1 + 34824 0.76 0.081279
Target:  5'- cCGCGCUCCGccgggggccCGGGCCGGAcCGCCGg -3'
miRNA:   3'- aGCGCGGGGCc--------GCCCGGCCU-GCGGCg -5'
5211 3' -68.4 NC_001798.1 + 6660 0.76 0.083276
Target:  5'- cCGCGCUuuCUcGCaGGCCGGGCGCCGCc -3'
miRNA:   3'- aGCGCGG--GGcCGcCCGGCCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 98621 0.76 0.085321
Target:  5'- cCGCGCCUcgggCGGCGuGGCCGcGAcCGUCGCg -3'
miRNA:   3'- aGCGCGGG----GCCGC-CCGGC-CU-GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 25959 0.76 0.085321
Target:  5'- gUGCGCUggCCGGCGGcGCgGGaccuGCGCCGCa -3'
miRNA:   3'- aGCGCGG--GGCCGCC-CGgCC----UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 85032 0.76 0.087413
Target:  5'- gUC-CGCCCCGGgGGuGCCGucgaGCGCCGCc -3'
miRNA:   3'- -AGcGCGGGGCCgCC-CGGCc---UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 135216 0.76 0.087413
Target:  5'- gCGgGCCUCGGgGaGGCCGGGCuGCCGg -3'
miRNA:   3'- aGCgCGGGGCCgC-CCGGCCUG-CGGCg -5'
5211 3' -68.4 NC_001798.1 + 43057 0.76 0.091744
Target:  5'- gCGCgugaGCCgCCGGCcgagcgcgccGGGCuCGGGCGCCGCc -3'
miRNA:   3'- aGCG----CGG-GGCCG----------CCCG-GCCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 147048 0.76 0.092634
Target:  5'- gUGCGCCCCGGCcggagGGGCCcccgcaccucGGcggccgcccccuccgGCGCCGCg -3'
miRNA:   3'- aGCGCGGGGCCG-----CCCGG----------CC---------------UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 41539 0.75 0.096278
Target:  5'- gUGCGCCCCGGCGGGgCGca--CCGCg -3'
miRNA:   3'- aGCGCGGGGCCGCCCgGCcugcGGCG- -5'
5211 3' -68.4 NC_001798.1 + 151595 0.75 0.096278
Target:  5'- -gGCuGCCCUGGCGcucGGCCGGGgGCCGg -3'
miRNA:   3'- agCG-CGGGGCCGC---CCGGCCUgCGGCg -5'
5211 3' -68.4 NC_001798.1 + 150157 0.75 0.096278
Target:  5'- cCGCGCCucuuCCGG-GGGCgGGcCGCCGCc -3'
miRNA:   3'- aGCGCGG----GGCCgCCCGgCCuGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 15274 0.75 0.096278
Target:  5'- -gGUGCCCCGGguucCGGGCguggCGGugGUCGCg -3'
miRNA:   3'- agCGCGGGGCC----GCCCG----GCCugCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 97457 0.75 0.098624
Target:  5'- cCGCGUgCUGGCGcGGCUGGGgGCCGg -3'
miRNA:   3'- aGCGCGgGGCCGC-CCGGCCUgCGGCg -5'
5211 3' -68.4 NC_001798.1 + 5307 0.75 0.098624
Target:  5'- cCGCGCCCCGGCucGCCGGGguuCCGCc -3'
miRNA:   3'- aGCGCGGGGCCGccCGGCCUgc-GGCG- -5'
5211 3' -68.4 NC_001798.1 + 74381 0.75 0.101023
Target:  5'- uUUGUGCCcuCCGGCccggGGGCCGuGGCGCCGg -3'
miRNA:   3'- -AGCGCGG--GGCCG----CCCGGC-CUGCGGCg -5'
5211 3' -68.4 NC_001798.1 + 4046 0.75 0.105735
Target:  5'- cCGCGCgggCCCGGCGGcGCuccaggcggcccgCGGuCGCCGCg -3'
miRNA:   3'- aGCGCG---GGGCCGCC-CG-------------GCCuGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 87516 0.75 0.108557
Target:  5'- gCGUGCCCCGGCua-CCGGuuCGCCGCc -3'
miRNA:   3'- aGCGCGGGGCCGcccGGCCu-GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 27867 0.74 0.111183
Target:  5'- aCGCGCUCCGGCuccGGGCCu-ACGCCGa -3'
miRNA:   3'- aGCGCGGGGCCG---CCCGGccUGCGGCg -5'
5211 3' -68.4 NC_001798.1 + 77240 0.74 0.111183
Target:  5'- -gGCGCCCUGGCGgacgcggugucGGCCcuGGGCGCgGCc -3'
miRNA:   3'- agCGCGGGGCCGC-----------CCGG--CCUGCGgCG- -5'
5211 3' -68.4 NC_001798.1 + 145905 0.74 0.111183
Target:  5'- cCGCGCCCCaccGGCGGGaUCGcGGCGagaCGCa -3'
miRNA:   3'- aGCGCGGGG---CCGCCC-GGC-CUGCg--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.