miRNA display CGI


Results 41 - 60 of 423 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5211 3' -68.4 NC_001798.1 + 147009 0.74 0.111183
Target:  5'- cUCGgGgacCCCCgGGCGGGCCGGGgcuugGCCGCc -3'
miRNA:   3'- -AGCgC---GGGG-CCGCCCGGCCUg----CGGCG- -5'
5211 3' -68.4 NC_001798.1 + 23585 0.74 0.111183
Target:  5'- -gGCGCCCCGGCcgagcccgcccaGGGCCGaGC-CCGCc -3'
miRNA:   3'- agCGCGGGGCCG------------CCCGGCcUGcGGCG- -5'
5211 3' -68.4 NC_001798.1 + 24710 0.74 0.113868
Target:  5'- cCGCGCCCgGggcccGCGGGCgCGGccgcccCGCCGCa -3'
miRNA:   3'- aGCGCGGGgC-----CGCCCG-GCCu-----GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 2548 0.74 0.113868
Target:  5'- gCGCgGCCCCcGCGGGagGGGCGgCCGCg -3'
miRNA:   3'- aGCG-CGGGGcCGCCCggCCUGC-GGCG- -5'
5211 3' -68.4 NC_001798.1 + 2305 0.74 0.116615
Target:  5'- gCGCGCgCgGGUcgaacaugaGGGCCGGGCGCCa- -3'
miRNA:   3'- aGCGCGgGgCCG---------CCCGGCCUGCGGcg -5'
5211 3' -68.4 NC_001798.1 + 3190 0.74 0.119139
Target:  5'- gUCGUcgGCCCCGGCcGGCgcggaggCGGGCGCgGCg -3'
miRNA:   3'- -AGCG--CGGGGCCGcCCG-------GCCUGCGgCG- -5'
5211 3' -68.4 NC_001798.1 + 26374 0.74 0.119422
Target:  5'- gCGgGCCgCGGCGGGaguucugcgcgCGGGCGCUGCu -3'
miRNA:   3'- aGCgCGGgGCCGCCCg----------GCCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 97834 0.74 0.122293
Target:  5'- cUGCGCCCUGacggcgggcGCGGGCaCGGucaucgacaaccGCGCCGCc -3'
miRNA:   3'- aGCGCGGGGC---------CGCCCG-GCC------------UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 31351 0.74 0.122293
Target:  5'- gCGCGCaggCgCGGCGGGUgGGcgaagACGCCGCg -3'
miRNA:   3'- aGCGCGg--G-GCCGCCCGgCC-----UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 131339 0.74 0.122293
Target:  5'- cCGCGCCCCGGgcgcgacguCGGcGCCcGGCGCgGCc -3'
miRNA:   3'- aGCGCGGGGCC---------GCC-CGGcCUGCGgCG- -5'
5211 3' -68.4 NC_001798.1 + 52496 0.74 0.123459
Target:  5'- aCGCGCgCCGGCGcagggacgacgcggcGGCCGcGcGCGCCGUg -3'
miRNA:   3'- aGCGCGgGGCCGC---------------CCGGC-C-UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 1137 0.74 0.123459
Target:  5'- cUCGCGCCUCGGCGGcGUggccagccccgcggCGGuccccaccaccuccACGCCGCc -3'
miRNA:   3'- -AGCGCGGGGCCGCC-CG--------------GCC--------------UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 150359 0.74 0.124931
Target:  5'- gCGCGUCCaccggcaCGGCGGGCggcgCGGGCccgGCCGCg -3'
miRNA:   3'- aGCGCGGG-------GCCGCCCG----GCCUG---CGGCG- -5'
5211 3' -68.4 NC_001798.1 + 118605 0.74 0.125228
Target:  5'- cUCGCGCCCCGau--GCCGcGGCGCUGCa -3'
miRNA:   3'- -AGCGCGGGGCcgccCGGC-CUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 23928 0.74 0.12732
Target:  5'- -gGCGCCCCGGCGcccgugugggcgccGaGCUGGGCGaCGCg -3'
miRNA:   3'- agCGCGGGGCCGC--------------C-CGGCCUGCgGCG- -5'
5211 3' -68.4 NC_001798.1 + 5902 0.74 0.128227
Target:  5'- cUC-CGCCCCgaGGCGGGcCCGGACggggggcggGCCGUu -3'
miRNA:   3'- -AGcGCGGGG--CCGCCC-GGCCUG---------CGGCG- -5'
5211 3' -68.4 NC_001798.1 + 106014 0.73 0.131293
Target:  5'- gUCGCuCUCUGGUGGgGCCGGAugaccCGCCGUg -3'
miRNA:   3'- -AGCGcGGGGCCGCC-CGGCCU-----GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 65677 0.73 0.132538
Target:  5'- aCGCacGCCCCGGUGGGgCGcGugcucuguuuguuguGCGCCGCc -3'
miRNA:   3'- aGCG--CGGGGCCGCCCgGC-C---------------UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 74754 0.73 0.134427
Target:  5'- cCGCgaaGCCCuCGGCc--CCGGACGCCGCg -3'
miRNA:   3'- aGCG---CGGG-GCCGcccGGCCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 22391 0.73 0.134427
Target:  5'- -gGCGgaaCCCCGGCGaGCCgGGGCGCgGCg -3'
miRNA:   3'- agCGC---GGGGCCGCcCGG-CCUGCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.