miRNA display CGI


Results 61 - 80 of 423 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5211 3' -68.4 NC_001798.1 + 52769 0.73 0.134427
Target:  5'- cCGCGUCCuCGGCGccCCGGGCGcCCGUg -3'
miRNA:   3'- aGCGCGGG-GCCGCccGGCCUGC-GGCG- -5'
5211 3' -68.4 NC_001798.1 + 74754 0.73 0.134427
Target:  5'- cCGCgaaGCCCuCGGCc--CCGGACGCCGCg -3'
miRNA:   3'- aGCG---CGGG-GCCGcccGGCCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 154094 0.73 0.134427
Target:  5'- -aGCGCCggGGCGcGGCCGG-CGCCGg -3'
miRNA:   3'- agCGCGGggCCGC-CCGGCCuGCGGCg -5'
5211 3' -68.4 NC_001798.1 + 2433 0.73 0.134427
Target:  5'- cUGgGCCCCGGC-GGCUGGcgGCGCCaGCc -3'
miRNA:   3'- aGCgCGGGGCCGcCCGGCC--UGCGG-CG- -5'
5211 3' -68.4 NC_001798.1 + 150856 0.73 0.137629
Target:  5'- gUCGgGUCgCGGCGGGCUGGGagguuCCGCg -3'
miRNA:   3'- -AGCgCGGgGCCGCCCGGCCUgc---GGCG- -5'
5211 3' -68.4 NC_001798.1 + 31139 0.73 0.137629
Target:  5'- -aGCGCCCCGGCgcgGGGgCGG-CGgUGCg -3'
miRNA:   3'- agCGCGGGGCCG---CCCgGCCuGCgGCG- -5'
5211 3' -68.4 NC_001798.1 + 95000 0.73 0.140901
Target:  5'- cUGgGCCCCGcagggcggcGCGGGCCuGGAgGCCGg -3'
miRNA:   3'- aGCgCGGGGC---------CGCCCGG-CCUgCGGCg -5'
5211 3' -68.4 NC_001798.1 + 146480 0.73 0.140901
Target:  5'- gCGgGCUCCGGggcCGGGCCGGGC-CgGCa -3'
miRNA:   3'- aGCgCGGGGCC---GCCCGGCCUGcGgCG- -5'
5211 3' -68.4 NC_001798.1 + 104660 0.73 0.140901
Target:  5'- -aGgGCCCCGugcucguaGCGGccGCCGGcCGCCGCg -3'
miRNA:   3'- agCgCGGGGC--------CGCC--CGGCCuGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 153030 0.73 0.140901
Target:  5'- cCGgGCCCgcgCGGCGGcgcgcgguugGCCGG-CGCCGCc -3'
miRNA:   3'- aGCgCGGG---GCCGCC----------CGGCCuGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 24672 0.73 0.140901
Target:  5'- cCGUGCCggGGCuGGCCGGAgcccggccCGCCGCg -3'
miRNA:   3'- aGCGCGGggCCGcCCGGCCU--------GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 152510 0.73 0.140901
Target:  5'- gCGCGCCCCGGCgGGGgCGGAgGgaGg -3'
miRNA:   3'- aGCGCGGGGCCG-CCCgGCCUgCggCg -5'
5211 3' -68.4 NC_001798.1 + 117575 0.73 0.140901
Target:  5'- -gGCGCgCCGGCauggaccacGGGCaGGAUGCCGUg -3'
miRNA:   3'- agCGCGgGGCCG---------CCCGgCCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 1502 0.73 0.143907
Target:  5'- cCGCGCCCgaggCGGCGGcCCGGccguccaGCGCCGg -3'
miRNA:   3'- aGCGCGGG----GCCGCCcGGCC-------UGCGGCg -5'
5211 3' -68.4 NC_001798.1 + 31581 0.73 0.144244
Target:  5'- gCGCGCCCCcGCGcGGCCGu-CGCCccGCg -3'
miRNA:   3'- aGCGCGGGGcCGC-CCGGCcuGCGG--CG- -5'
5211 3' -68.4 NC_001798.1 + 2663 0.73 0.14766
Target:  5'- gCGCGCCUcccgCGGCGcGGaggCGGGCGCgGCg -3'
miRNA:   3'- aGCGCGGG----GCCGC-CCg--GCCUGCGgCG- -5'
5211 3' -68.4 NC_001798.1 + 24476 0.73 0.14766
Target:  5'- cUCGcCGCCCUGG-GGcGCCuGAgCGCCGCg -3'
miRNA:   3'- -AGC-GCGGGGCCgCC-CGGcCU-GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 18323 0.73 0.14766
Target:  5'- cCGUGUuugucUCCGGCGGGaCGGACGCCu- -3'
miRNA:   3'- aGCGCG-----GGGCCGCCCgGCCUGCGGcg -5'
5211 3' -68.4 NC_001798.1 + 93302 0.73 0.14766
Target:  5'- gCGCGCgCC-GCGGGCCucguGGGCGCCa- -3'
miRNA:   3'- aGCGCGgGGcCGCCCGG----CCUGCGGcg -5'
5211 3' -68.4 NC_001798.1 + 73214 0.73 0.151149
Target:  5'- uUCGCGCCUCGGCGuuucGGCCuucCGCCGg -3'
miRNA:   3'- -AGCGCGGGGCCGC----CCGGccuGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.