miRNA display CGI


Results 81 - 100 of 423 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5211 3' -68.4 NC_001798.1 + 3128 0.73 0.151149
Target:  5'- aCGCGgCCCGccuccGCGcGCCGGcCGCCGCc -3'
miRNA:   3'- aGCGCgGGGC-----CGCcCGGCCuGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 29978 0.73 0.151149
Target:  5'- gUCGgGggaCCCCcGUGGGCCGuGCGCCGCc -3'
miRNA:   3'- -AGCgC---GGGGcCGCCCGGCcUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 113609 0.72 0.154353
Target:  5'- cCGCGCCCguucucugggaauCGccuGCGcGGCCGG-CGCCGCc -3'
miRNA:   3'- aGCGCGGG-------------GC---CGC-CCGGCCuGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 53609 0.72 0.154353
Target:  5'- gCGCGCCCCGuucaagaGCgGGGCCGccgcggccaaGuACGCCGCc -3'
miRNA:   3'- aGCGCGGGGC-------CG-CCCGGC----------C-UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 1825 0.72 0.154713
Target:  5'- aCGgGCCCguCGGCGGGCCaGucCGCgGCg -3'
miRNA:   3'- aGCgCGGG--GCCGCCCGGcCu-GCGgCG- -5'
5211 3' -68.4 NC_001798.1 + 52384 0.72 0.154713
Target:  5'- gCGCGCCgccugcucgccaCCaGCGGGCUGaACGCCGUg -3'
miRNA:   3'- aGCGCGG------------GGcCGCCCGGCcUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 31783 0.72 0.154713
Target:  5'- aCGCGCgCgGGUcgggaGGGCCGGGCGCgGa -3'
miRNA:   3'- aGCGCGgGgCCG-----CCCGGCCUGCGgCg -5'
5211 3' -68.4 NC_001798.1 + 135750 0.72 0.154713
Target:  5'- aCGCGCUgagacgaauccuCCGGC-GGCCGGcCGCCGg -3'
miRNA:   3'- aGCGCGG------------GGCCGcCCGGCCuGCGGCg -5'
5211 3' -68.4 NC_001798.1 + 47844 0.72 0.158353
Target:  5'- gCGCGCuccuccacccCCCGG-GGGCCccguGGGCGCCGg -3'
miRNA:   3'- aGCGCG----------GGGCCgCCCGG----CCUGCGGCg -5'
5211 3' -68.4 NC_001798.1 + 110554 0.72 0.158353
Target:  5'- cCGCgGCCCUGGCGGGCauccuuagGGugGuCCGa -3'
miRNA:   3'- aGCG-CGGGGCCGCCCGg-------CCugC-GGCg -5'
5211 3' -68.4 NC_001798.1 + 54645 0.72 0.158353
Target:  5'- cCGCGCCCCccgaGCaGcGGCCGG-CaGCCGCg -3'
miRNA:   3'- aGCGCGGGGc---CG-C-CCGGCCuG-CGGCG- -5'
5211 3' -68.4 NC_001798.1 + 1380 0.72 0.16207
Target:  5'- gUCGCGCCCCaGCgccacguagacGGGCCGcaGCGgCGCg -3'
miRNA:   3'- -AGCGCGGGGcCG-----------CCCGGCc-UGCgGCG- -5'
5211 3' -68.4 NC_001798.1 + 20493 0.72 0.16207
Target:  5'- gCGCGauCCCCGGaagacuGGCCGGggccugggguuGCGCCGCg -3'
miRNA:   3'- aGCGC--GGGGCCgc----CCGGCC-----------UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 121780 0.72 0.16207
Target:  5'- -gGCGUCCuCGGUcucgggcgGGGCCGGGCcgGCCGUu -3'
miRNA:   3'- agCGCGGG-GCCG--------CCCGGCCUG--CGGCG- -5'
5211 3' -68.4 NC_001798.1 + 139936 0.72 0.16207
Target:  5'- gCGgGCCCUGGCGGcGCacggGGGCGaagaCGCg -3'
miRNA:   3'- aGCgCGGGGCCGCC-CGg---CCUGCg---GCG- -5'
5211 3' -68.4 NC_001798.1 + 135484 0.72 0.165865
Target:  5'- aCGUGgaCCCCGG-GGaCgCGGACGCCGCg -3'
miRNA:   3'- aGCGC--GGGGCCgCCcG-GCCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 43134 0.72 0.165865
Target:  5'- gCGCGUCCCGcgucacGCGGGCCcagucgucccGCGCCGCc -3'
miRNA:   3'- aGCGCGGGGC------CGCCCGGcc--------UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 146575 0.72 0.16974
Target:  5'- aCGgGCCgCGGgccagcagaCGGGCCGcGGCGCCaGCg -3'
miRNA:   3'- aGCgCGGgGCC---------GCCCGGC-CUGCGG-CG- -5'
5211 3' -68.4 NC_001798.1 + 31475 0.72 0.16974
Target:  5'- gCGcCGCCCC-GCGGGCCccGgGCCGCu -3'
miRNA:   3'- aGC-GCGGGGcCGCCCGGccUgCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 93141 0.72 0.16974
Target:  5'- -aGCGCCUggccucggugaUGGCGGGC--GACGCCGCc -3'
miRNA:   3'- agCGCGGG-----------GCCGCCCGgcCUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.