miRNA display CGI


Results 101 - 120 of 423 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5211 3' -68.4 NC_001798.1 + 31475 0.72 0.16974
Target:  5'- gCGcCGCCCC-GCGGGCCccGgGCCGCu -3'
miRNA:   3'- aGC-GCGGGGcCGCCCGGccUgCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 129350 0.72 0.16974
Target:  5'- -aGCGCCCgccgggccUGGCGGGgcccCCGGAC-CCGCc -3'
miRNA:   3'- agCGCGGG--------GCCGCCC----GGCCUGcGGCG- -5'
5211 3' -68.4 NC_001798.1 + 3259 0.72 0.173297
Target:  5'- -gGCGCCguagCCGGCGGGCaccgcgcgcucguCGGccggcgACGCCGCc -3'
miRNA:   3'- agCGCGG----GGCCGCCCG-------------GCC------UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 54725 0.72 0.173696
Target:  5'- gUGCGgaCCUGG-GGGCCGGACGCgGa -3'
miRNA:   3'- aGCGCg-GGGCCgCCCGGCCUGCGgCg -5'
5211 3' -68.4 NC_001798.1 + 39538 0.72 0.173696
Target:  5'- cCGCGCCUCgccgugGGUGGcGCCGGG-GCCGUc -3'
miRNA:   3'- aGCGCGGGG------CCGCC-CGGCCUgCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 72318 0.72 0.173696
Target:  5'- --aCGCCCUGGCGGcCCGGGgggUGCUGCa -3'
miRNA:   3'- agcGCGGGGCCGCCcGGCCU---GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 25074 0.72 0.173696
Target:  5'- cCcCGCCCCGGCcaGGgcgccGCCGGGCGgCGCc -3'
miRNA:   3'- aGcGCGGGGCCG--CC-----CGGCCUGCgGCG- -5'
5211 3' -68.4 NC_001798.1 + 86828 0.72 0.173696
Target:  5'- cCGuCGCUCCGGCucccGGcCCGGGCccgGCCGCg -3'
miRNA:   3'- aGC-GCGGGGCCGc---CC-GGCCUG---CGGCG- -5'
5211 3' -68.4 NC_001798.1 + 153671 0.72 0.173696
Target:  5'- gCGCGUCCgCgGGCGGGgacgCGGGgGCCGCc -3'
miRNA:   3'- aGCGCGGG-G-CCGCCCg---GCCUgCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 5942 0.72 0.173696
Target:  5'- cUCGCGCacauaaagggCCGGCGucCCGGuCGCCGCc -3'
miRNA:   3'- -AGCGCGg---------GGCCGCccGGCCuGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 82967 0.72 0.173696
Target:  5'- -aGCGCCCUGGCGGuuuugauCCGcGcAUGCCGCc -3'
miRNA:   3'- agCGCGGGGCCGCCc------GGC-C-UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 117760 0.72 0.177326
Target:  5'- gCGCGCCCuucgCGGCcacGGCCaacccguGGGCGUCGCa -3'
miRNA:   3'- aGCGCGGG----GCCGc--CCGG-------CCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 105255 0.71 0.18061
Target:  5'- -gGCGUCCCGcGCGgcauccgccucuucGGCCGcGGcCGCCGCg -3'
miRNA:   3'- agCGCGGGGC-CGC--------------CCGGC-CU-GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 115530 0.71 0.181855
Target:  5'- gUCGCgGCCCCGGCcGGCCccGGCGCgGa -3'
miRNA:   3'- -AGCG-CGGGGCCGcCCGGc-CUGCGgCg -5'
5211 3' -68.4 NC_001798.1 + 148404 0.71 0.181855
Target:  5'- -gGUGUgCgGGCGGGgUGGGCGCCGg -3'
miRNA:   3'- agCGCGgGgCCGCCCgGCCUGCGGCg -5'
5211 3' -68.4 NC_001798.1 + 87986 0.71 0.181855
Target:  5'- aCGCGCcuCCCGGgGGGUCGGcauGCGaCgGCg -3'
miRNA:   3'- aGCGCG--GGGCCgCCCGGCC---UGC-GgCG- -5'
5211 3' -68.4 NC_001798.1 + 145633 0.71 0.181855
Target:  5'- cCGCcccGCCCggcaGGgGGGCCccGGCGCCGCg -3'
miRNA:   3'- aGCG---CGGGg---CCgCCCGGc-CUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 2590 0.71 0.181855
Target:  5'- cCGCGCggcucuucUUCGGgGGGCgCgGGGCGCCGCc -3'
miRNA:   3'- aGCGCG--------GGGCCgCCCG-G-CCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 51921 0.71 0.181855
Target:  5'- gUUGCGgCCCGuGgGGGCCGc-CGCCGUg -3'
miRNA:   3'- -AGCGCgGGGC-CgCCCGGCcuGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 1341 0.71 0.181855
Target:  5'- cCGCGgCCCGcGCaGcuccGCCGGGcCGCCGCg -3'
miRNA:   3'- aGCGCgGGGC-CGcC----CGGCCU-GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.