miRNA display CGI


Results 21 - 40 of 423 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5211 3' -68.4 NC_001798.1 + 83887 0.66 0.416932
Target:  5'- cCG-GCCCgGGCGcuCCGGaagagugguGCGCCGCc -3'
miRNA:   3'- aGCgCGGGgCCGCccGGCC---------UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 153371 0.66 0.416932
Target:  5'- cUCG-GCCgCCGccacGCGGcGCCGGAaccgGUCGCg -3'
miRNA:   3'- -AGCgCGG-GGC----CGCC-CGGCCUg---CGGCG- -5'
5211 3' -68.4 NC_001798.1 + 60234 0.66 0.416134
Target:  5'- aCGCGCCCUccucGCGGGCgGcaaagguGACGCagguGCg -3'
miRNA:   3'- aGCGCGGGGc---CGCCCGgC-------CUGCGg---CG- -5'
5211 3' -68.4 NC_001798.1 + 222 0.66 0.416134
Target:  5'- cCGCGCCCgcccccgcgCGGCaGGaCGGGgacuagcaggcugUGCCGCa -3'
miRNA:   3'- aGCGCGGG---------GCCGcCCgGCCU-------------GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 5162 0.66 0.416134
Target:  5'- cCGCGCcgaucggguagauCCUGGCGGccgcGUCGGuaGCCGCg -3'
miRNA:   3'- aGCGCG-------------GGGCCGCC----CGGCCugCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 9166 0.66 0.414544
Target:  5'- cCGCGCCggggggcagggucuCUGGCGGGUccccgCGuGCGuCCGCg -3'
miRNA:   3'- aGCGCGG--------------GGCCGCCCG-----GCcUGC-GGCG- -5'
5211 3' -68.4 NC_001798.1 + 1232 0.66 0.412164
Target:  5'- cCGaCGCCCagcguaucugcgggGGCGGGCCc-GCGuCCGCg -3'
miRNA:   3'- aGC-GCGGGg-------------CCGCCCGGccUGC-GGCG- -5'
5211 3' -68.4 NC_001798.1 + 82308 0.66 0.409005
Target:  5'- gUCGUG-CCCGGaGGcCCGGuugccCGCCGCc -3'
miRNA:   3'- -AGCGCgGGGCCgCCcGGCCu----GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 86251 0.66 0.409005
Target:  5'- cCGUGCUgaagcacggCCGG-GGGCgCGGGCGCaccgGCg -3'
miRNA:   3'- aGCGCGG---------GGCCgCCCG-GCCUGCGg---CG- -5'
5211 3' -68.4 NC_001798.1 + 8940 0.66 0.409005
Target:  5'- aUGaGCUgCGGCGGGgUGGcCGCCGg -3'
miRNA:   3'- aGCgCGGgGCCGCCCgGCCuGCGGCg -5'
5211 3' -68.4 NC_001798.1 + 11387 0.66 0.409005
Target:  5'- cUCG-GCUCCgaGGCGGGCCauGGcCGCCu- -3'
miRNA:   3'- -AGCgCGGGG--CCGCCCGG--CCuGCGGcg -5'
5211 3' -68.4 NC_001798.1 + 16218 0.66 0.409005
Target:  5'- aCGCGCCgCCugugGGgGGGCgGuGGgGCCGg -3'
miRNA:   3'- aGCGCGG-GG----CCgCCCGgC-CUgCGGCg -5'
5211 3' -68.4 NC_001798.1 + 71544 0.66 0.409005
Target:  5'- --aCGUUCCGGCGGauCCaGGGCGCCaGCg -3'
miRNA:   3'- agcGCGGGGCCGCCc-GG-CCUGCGG-CG- -5'
5211 3' -68.4 NC_001798.1 + 102352 0.66 0.409005
Target:  5'- cCGUGguCUCCGGCGGccGCCGGAaGCC-Ca -3'
miRNA:   3'- aGCGC--GGGGCCGCC--CGGCCUgCGGcG- -5'
5211 3' -68.4 NC_001798.1 + 145720 0.66 0.409005
Target:  5'- gCGaGCCCCGGCcccGGCCcgcgcccCGCCGCc -3'
miRNA:   3'- aGCgCGGGGCCGc--CCGGccu----GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 113513 0.66 0.409005
Target:  5'- gUGCGCCCUGGUGG--CGGcCGCC-Ca -3'
miRNA:   3'- aGCGCGGGGCCGCCcgGCCuGCGGcG- -5'
5211 3' -68.4 NC_001798.1 + 26313 0.66 0.409005
Target:  5'- cUGCGgCCCGucuacguggcGCuGGGgCGcGACGCCGUg -3'
miRNA:   3'- aGCGCgGGGC----------CG-CCCgGC-CUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 93263 0.66 0.409005
Target:  5'- --aCGCCCgCGGCccgcGCCGG-CGCCGUc -3'
miRNA:   3'- agcGCGGG-GCCGcc--CGGCCuGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 42861 0.66 0.408217
Target:  5'- -aGCGCCCCGcGCcuaaagugacccaGGGCCucguGGA-GCCGg -3'
miRNA:   3'- agCGCGGGGC-CG-------------CCCGG----CCUgCGGCg -5'
5211 3' -68.4 NC_001798.1 + 36256 0.66 0.406645
Target:  5'- gCGCGCUCCuguguggaccccggGGUGGGCggCGGGggggggUGCCGUg -3'
miRNA:   3'- aGCGCGGGG--------------CCGCCCG--GCCU------GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.