miRNA display CGI


Results 41 - 60 of 423 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5211 3' -68.4 NC_001798.1 + 5556 0.66 0.40586
Target:  5'- cCGCGCUcccguuggcccccgCCGGCcccaaagGGGCCGGcgAgGUCGCc -3'
miRNA:   3'- aGCGCGG--------------GGCCG-------CCCGGCC--UgCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 63449 0.66 0.401172
Target:  5'- aCGCGCgCCGccuCGGGCUuGGCGUgGCc -3'
miRNA:   3'- aGCGCGgGGCc--GCCCGGcCUGCGgCG- -5'
5211 3' -68.4 NC_001798.1 + 150562 0.66 0.401172
Target:  5'- -aGCGgCCCGGgGcccGCgGGGCGgCGCg -3'
miRNA:   3'- agCGCgGGGCCgCc--CGgCCUGCgGCG- -5'
5211 3' -68.4 NC_001798.1 + 16983 0.66 0.400395
Target:  5'- -gGCGCagcaacuCCgCGGCGcuuGGgCGGAgCGCCGCg -3'
miRNA:   3'- agCGCG-------GG-GCCGC---CCgGCCU-GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 119427 0.66 0.396519
Target:  5'- cUG-GCCCCGGCGGuuCgGGuguguacguucgacgGCGCCGCc -3'
miRNA:   3'- aGCgCGGGGCCGCCc-GgCC---------------UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 4626 0.66 0.393436
Target:  5'- gUCGCGCUCCGGgGGGggcgaCGGGa-UCGUg -3'
miRNA:   3'- -AGCGCGGGGCCgCCCg----GCCUgcGGCG- -5'
5211 3' -68.4 NC_001798.1 + 92412 0.66 0.393436
Target:  5'- gUCGgGUCCCGcacgaCGGGCCuugGGGgGaCCGCg -3'
miRNA:   3'- -AGCgCGGGGCc----GCCCGG---CCUgC-GGCG- -5'
5211 3' -68.4 NC_001798.1 + 57721 0.66 0.393436
Target:  5'- ---aGCCCCGGCccccgcgaaGGaCCGGugGgCGCg -3'
miRNA:   3'- agcgCGGGGCCG---------CCcGGCCugCgGCG- -5'
5211 3' -68.4 NC_001798.1 + 90847 0.66 0.393436
Target:  5'- aCG-GUCCCGGCGGGC-GuGAUGgCGUc -3'
miRNA:   3'- aGCgCGGGGCCGCCCGgC-CUGCgGCG- -5'
5211 3' -68.4 NC_001798.1 + 25869 0.66 0.392668
Target:  5'- gCGCGCCgCGGacuggcccgccgaCGGGCCcguGGucuCGCgGCa -3'
miRNA:   3'- aGCGCGGgGCC-------------GCCCGG---CCu--GCGgCG- -5'
5211 3' -68.4 NC_001798.1 + 69170 0.66 0.392668
Target:  5'- gCGgaGCCCgaUGGCGGGCCaggugggGGAggucgguggggUGCCGCa -3'
miRNA:   3'- aGCg-CGGG--GCCGCCCGG-------CCU-----------GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 22879 0.66 0.391135
Target:  5'- gCGCgGCCCggguucggguggcaCGGUGGGCCGGAgGagaaCGa -3'
miRNA:   3'- aGCG-CGGG--------------GCCGCCCGGCCUgCg---GCg -5'
5211 3' -68.4 NC_001798.1 + 139028 0.66 0.388842
Target:  5'- -gGCGUUCCGGUaccuGcgaaccagccgcugcGGCUGGAgGCCGCg -3'
miRNA:   3'- agCGCGGGGCCG----C---------------CCGGCCUgCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 149624 0.66 0.388842
Target:  5'- cUCGagacCCCCGcgaugggcagguagcGCGugaGGCCGGGCGCCGg -3'
miRNA:   3'- -AGCgc--GGGGC---------------CGC---CCGGCCUGCGGCg -5'
5211 3' -68.4 NC_001798.1 + 93084 0.66 0.385798
Target:  5'- ---aGCCCCaGCGGGgCGcgcgcGACGCCGg -3'
miRNA:   3'- agcgCGGGGcCGCCCgGC-----CUGCGGCg -5'
5211 3' -68.4 NC_001798.1 + 124895 0.66 0.385798
Target:  5'- -gGCGCgCUGGCGGaaguGCCGcACGgCCGUg -3'
miRNA:   3'- agCGCGgGGCCGCC----CGGCcUGC-GGCG- -5'
5211 3' -68.4 NC_001798.1 + 147899 0.66 0.385798
Target:  5'- gUCGuCGuUCCCGggggggcaggcGCGGGUCGGGC-CCGUa -3'
miRNA:   3'- -AGC-GC-GGGGC-----------CGCCCGGCCUGcGGCG- -5'
5211 3' -68.4 NC_001798.1 + 2183 0.66 0.385798
Target:  5'- gUCGgGCaCCUGGCGcauccaGGCCGccGCGCgGCg -3'
miRNA:   3'- -AGCgCG-GGGCCGC------CCGGCc-UGCGgCG- -5'
5211 3' -68.4 NC_001798.1 + 25993 0.66 0.385798
Target:  5'- cCGUGCUggccuCCGGCcgcguguucGGGCCGGGggucuuCGCgCGCg -3'
miRNA:   3'- aGCGCGG-----GGCCG---------CCCGGCCU------GCG-GCG- -5'
5211 3' -68.4 NC_001798.1 + 92322 0.66 0.385798
Target:  5'- gCGCGCagCGGCGacgCGGACGUCGCc -3'
miRNA:   3'- aGCGCGggGCCGCccgGCCUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.