Results 81 - 100 of 423 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5211 | 3' | -68.4 | NC_001798.1 | + | 26425 | 0.66 | 0.376016 |
Target: 5'- aCGCGCCCCcGCuGGUgcugcgcgacgacgCGGACGCgGg -3' miRNA: 3'- aGCGCGGGGcCGcCCG--------------GCCUGCGgCg -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 121460 | 0.67 | 0.373039 |
Target: 5'- gCGCGUCCCcagcgcgGGCGGgcuguucgucucccuGCCGGuCGCgUGCg -3' miRNA: 3'- aGCGCGGGG-------CCGCC---------------CGGCCuGCG-GCG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 28176 | 0.67 | 0.370818 |
Target: 5'- gCGaacaGCCCCccgagcgagGGCGGggggaaggcGCCGGAggccccgcaCGCCGCg -3' miRNA: 3'- aGCg---CGGGG---------CCGCC---------CGGCCU---------GCGGCG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 31535 | 0.67 | 0.370818 |
Target: 5'- cUCGgGCCCCGGgGGG--GGAgGuCUGCc -3' miRNA: 3'- -AGCgCGGGGCCgCCCggCCUgC-GGCG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 30429 | 0.67 | 0.370818 |
Target: 5'- aCGC-CCCCGGCccggcccccGGCCGaGCGCCa- -3' miRNA: 3'- aGCGcGGGGCCGc--------CCGGCcUGCGGcg -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 51177 | 0.67 | 0.370818 |
Target: 5'- cCGagGCCCgGGCGGcggcgcccccccGCCGGGCGUCc- -3' miRNA: 3'- aGCg-CGGGgCCGCC------------CGGCCUGCGGcg -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 105416 | 0.67 | 0.370818 |
Target: 5'- cCGCGgCCgCGGUGcGCUGGGCcugcagcacuGCCGCc -3' miRNA: 3'- aGCGCgGG-GCCGCcCGGCCUG----------CGGCG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 109061 | 0.67 | 0.370818 |
Target: 5'- aUCGCGUcuuuguCCUGG-GGGCCccGACGcCCGCc -3' miRNA: 3'- -AGCGCG------GGGCCgCCCGGc-CUGC-GGCG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 113338 | 0.67 | 0.370818 |
Target: 5'- aCGgGUggaCCGGaCGGGCgGuGGCGCCGg -3' miRNA: 3'- aGCgCGg--GGCC-GCCCGgC-CUGCGGCg -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 93615 | 0.67 | 0.370079 |
Target: 5'- -aGCGCUgcgaCGGCGGagucaucGUCGGGCGCCa- -3' miRNA: 3'- agCGCGGg---GCCGCC-------CGGCCUGCGGcg -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 52316 | 0.67 | 0.369342 |
Target: 5'- uUCGCGCCCUgccccugGGCagccccgGGGUCGuGGCgGCCGa -3' miRNA: 3'- -AGCGCGGGG-------CCG-------CCCGGC-CUG-CGGCg -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 31245 | 0.67 | 0.363478 |
Target: 5'- -gGCGCCCCGuuGCGGGCgGGG-GUgGg -3' miRNA: 3'- agCGCGGGGC--CGCCCGgCCUgCGgCg -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 36022 | 0.67 | 0.363478 |
Target: 5'- cCGCGCCuuGGCuguuugggGGGUggcggCGGugGUCGg -3' miRNA: 3'- aGCGCGGggCCG--------CCCG-----GCCugCGGCg -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 62285 | 0.67 | 0.363478 |
Target: 5'- -gGCGgCCCGGCGGGa-GcGCGCCa- -3' miRNA: 3'- agCGCgGGGCCGCCCggCcUGCGGcg -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 83615 | 0.67 | 0.363478 |
Target: 5'- gUCGCGCCgUaagaauCGGGCCGGAgGCgggaGCg -3' miRNA: 3'- -AGCGCGGgGcc----GCCCGGCCUgCGg---CG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 88659 | 0.67 | 0.363478 |
Target: 5'- gUCGCccaugGCCaCCaGGCccgcGGCCGuGAgGCCGCg -3' miRNA: 3'- -AGCG-----CGG-GG-CCGc---CCGGC-CUgCGGCG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 92952 | 0.67 | 0.363478 |
Target: 5'- cCGUGgCCCuGCGuGCCcggaacguGGACGCCGUg -3' miRNA: 3'- aGCGCgGGGcCGCcCGG--------CCUGCGGCG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 153302 | 0.67 | 0.363478 |
Target: 5'- uUCGUggGCCCgGGCucGGGCuCGGGC-CCGa -3' miRNA: 3'- -AGCG--CGGGgCCG--CCCG-GCCUGcGGCg -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 38415 | 0.67 | 0.363478 |
Target: 5'- aCGCGCUaugaaGCGGGCCGGGCcgggGCCcCa -3' miRNA: 3'- aGCGCGGggc--CGCCCGGCCUG----CGGcG- -5' |
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5211 | 3' | -68.4 | NC_001798.1 | + | 53709 | 0.67 | 0.363478 |
Target: 5'- aUGCGCCCCGcagacccgaGCcGGCCgagcacGGACaCCGCa -3' miRNA: 3'- aGCGCGGGGC---------CGcCCGG------CCUGcGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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