miRNA display CGI


Results 1 - 20 of 423 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5211 3' -68.4 NC_001798.1 + 142 0.68 0.287672
Target:  5'- cCGCuCCCCcGCGGGCgccgccccucccccCGcGCGCCGCg -3'
miRNA:   3'- aGCGcGGGGcCGCCCG--------------GCcUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 222 0.66 0.416134
Target:  5'- cCGCGCCCgcccccgcgCGGCaGGaCGGGgacuagcaggcugUGCCGCa -3'
miRNA:   3'- aGCGCGGG---------GCCGcCCgGCCU-------------GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 1137 0.74 0.123459
Target:  5'- cUCGCGCCUCGGCGGcGUggccagccccgcggCGGuccccaccaccuccACGCCGCc -3'
miRNA:   3'- -AGCGCGGGGCCGCC-CG--------------GCC--------------UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 1232 0.66 0.412164
Target:  5'- cCGaCGCCCagcguaucugcgggGGCGGGCCc-GCGuCCGCg -3'
miRNA:   3'- aGC-GCGGGg-------------CCGCCCGGccUGC-GGCG- -5'
5211 3' -68.4 NC_001798.1 + 1341 0.71 0.181855
Target:  5'- cCGCGgCCCGcGCaGcuccGCCGGGcCGCCGCg -3'
miRNA:   3'- aGCGCgGGGC-CGcC----CGGCCU-GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 1380 0.72 0.16207
Target:  5'- gUCGCGCCCCaGCgccacguagacGGGCCGcaGCGgCGCg -3'
miRNA:   3'- -AGCGCGGGGcCG-----------CCCGGCc-UGCgGCG- -5'
5211 3' -68.4 NC_001798.1 + 1464 0.7 0.217954
Target:  5'- cUCGCaGaagUCCGGCGcGCCGGGCGCCa- -3'
miRNA:   3'- -AGCG-Cg--GGGCCGCcCGGCCUGCGGcg -5'
5211 3' -68.4 NC_001798.1 + 1502 0.73 0.143907
Target:  5'- cCGCGCCCgaggCGGCGGcCCGGccguccaGCGCCGg -3'
miRNA:   3'- aGCGCGGG----GCCGCCcGGCC-------UGCGGCg -5'
5211 3' -68.4 NC_001798.1 + 1688 0.71 0.199193
Target:  5'- gCGCGaagacCCCCGGCccgaacacGcGGCCGGAgGCCaGCa -3'
miRNA:   3'- aGCGC-----GGGGCCG--------C-CCGGCCUgCGG-CG- -5'
5211 3' -68.4 NC_001798.1 + 1825 0.72 0.154713
Target:  5'- aCGgGCCCguCGGCGGGCCaGucCGCgGCg -3'
miRNA:   3'- aGCgCGGG--GCCGCCCGGcCu-GCGgCG- -5'
5211 3' -68.4 NC_001798.1 + 2106 0.67 0.342069
Target:  5'- cCGC-CCCCGGCGcGGCCcgcggccaGGuccuCGCCcgGCa -3'
miRNA:   3'- aGCGcGGGGCCGC-CCGG--------CCu---GCGG--CG- -5'
5211 3' -68.4 NC_001798.1 + 2183 0.66 0.385798
Target:  5'- gUCGgGCaCCUGGCGcauccaGGCCGccGCGCgGCg -3'
miRNA:   3'- -AGCgCG-GGGCCGC------CCGGCc-UGCGgCG- -5'
5211 3' -68.4 NC_001798.1 + 2257 0.83 0.024795
Target:  5'- gCGCGCCgCCGGgGGGCgGGGCGgCGCa -3'
miRNA:   3'- aGCGCGG-GGCCgCCCGgCCUGCgGCG- -5'
5211 3' -68.4 NC_001798.1 + 2305 0.74 0.116615
Target:  5'- gCGCGCgCgGGUcgaacaugaGGGCCGGGCGCCa- -3'
miRNA:   3'- aGCGCGgGgCCG---------CCCGGCCUGCGGcg -5'
5211 3' -68.4 NC_001798.1 + 2433 0.73 0.134427
Target:  5'- cUGgGCCCCGGC-GGCUGGcgGCGCCaGCc -3'
miRNA:   3'- aGCgCGGGGCCGcCCGGCC--UGCGG-CG- -5'
5211 3' -68.4 NC_001798.1 + 2474 0.85 0.019737
Target:  5'- -gGgGCCCuCGGCGGGCCGGcgggucaGCGCCGCg -3'
miRNA:   3'- agCgCGGG-GCCGCCCGGCC-------UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 2548 0.74 0.113868
Target:  5'- gCGCgGCCCCcGCGGGagGGGCGgCCGCg -3'
miRNA:   3'- aGCG-CGGGGcCGCCCggCCUGC-GGCG- -5'
5211 3' -68.4 NC_001798.1 + 2590 0.71 0.181855
Target:  5'- cCGCGCggcucuucUUCGGgGGGCgCgGGGCGCCGCc -3'
miRNA:   3'- aGCGCG--------GGGCCgCCCG-G-CCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 2631 0.7 0.222875
Target:  5'- -gGCGCCCUGGCcgGGGCgGGGCuCUuGCg -3'
miRNA:   3'- agCGCGGGGCCG--CCCGgCCUGcGG-CG- -5'
5211 3' -68.4 NC_001798.1 + 2663 0.73 0.14766
Target:  5'- gCGCGCCUcccgCGGCGcGGaggCGGGCGCgGCg -3'
miRNA:   3'- aGCGCGGG----GCCGC-CCg--GCCUGCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.