miRNA display CGI


Results 21 - 40 of 423 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5211 3' -68.4 NC_001798.1 + 2967 0.68 0.321585
Target:  5'- -gGCGCgUCGGCGugcGGCgGGGCgGCCGg -3'
miRNA:   3'- agCGCGgGGCCGC---CCGgCCUG-CGGCg -5'
5211 3' -68.4 NC_001798.1 + 2999 0.77 0.078751
Target:  5'- gCGgGCCCCgggcgcgggggcgcGGCGGGCCGGGCuCCGg -3'
miRNA:   3'- aGCgCGGGG--------------CCGCCCGGCCUGcGGCg -5'
5211 3' -68.4 NC_001798.1 + 3037 0.68 0.321585
Target:  5'- -gGCcaGCCCCGGCacGGCCgccaGGuCGCCGUc -3'
miRNA:   3'- agCG--CGGGGCCGc-CCGG----CCuGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 3128 0.73 0.151149
Target:  5'- aCGCGgCCCGccuccGCGcGCCGGcCGCCGCc -3'
miRNA:   3'- aGCGCgGGGC-----CGCcCGGCCuGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 3190 0.74 0.119139
Target:  5'- gUCGUcgGCCCCGGCcGGCgcggaggCGGGCGCgGCg -3'
miRNA:   3'- -AGCG--CGGGGCCGcCCG-------GCCUGCGgCG- -5'
5211 3' -68.4 NC_001798.1 + 3259 0.72 0.173297
Target:  5'- -gGCGCCguagCCGGCGGGCaccgcgcgcucguCGGccggcgACGCCGCc -3'
miRNA:   3'- agCGCGG----GGCCGCCCG-------------GCC------UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 3325 0.66 0.424951
Target:  5'- -gGCGgCggCGGCGGGCuucccgCGGGCGUCGUc -3'
miRNA:   3'- agCGCgGg-GCCGCCCG------GCCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 3396 0.71 0.207923
Target:  5'- uUCGCGCCCCGGuCaGcGCCGcGuucucgcGCGCCaGCa -3'
miRNA:   3'- -AGCGCGGGGCC-GcC-CGGC-C-------UGCGG-CG- -5'
5211 3' -68.4 NC_001798.1 + 3836 0.68 0.295722
Target:  5'- -gGCGCCCCccagaGGcCGGGgCGGcUGUCGCc -3'
miRNA:   3'- agCGCGGGG-----CC-GCCCgGCCuGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 3884 0.82 0.031834
Target:  5'- aCGCGCCCCGG-GGGCgGGGgGCCGg -3'
miRNA:   3'- aGCGCGGGGCCgCCCGgCCUgCGGCg -5'
5211 3' -68.4 NC_001798.1 + 3949 0.68 0.321585
Target:  5'- gCGCGCgUagaaGGC--GCCGGAgGCCGCg -3'
miRNA:   3'- aGCGCGgGg---CCGccCGGCCUgCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 4046 0.75 0.105735
Target:  5'- cCGCGCgggCCCGGCGGcGCuccaggcggcccgCGGuCGCCGCg -3'
miRNA:   3'- aGCGCG---GGGCCGCC-CG-------------GCCuGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 4110 0.78 0.059151
Target:  5'- cUCG-GCCCUgGGCGGGCUcggccgGGGCGCCGCc -3'
miRNA:   3'- -AGCgCGGGG-CCGCCCGG------CCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 4192 0.66 0.378258
Target:  5'- gUCcCGCCCgCGGCGuGGuCUGcGGCGCUGg -3'
miRNA:   3'- -AGcGCGGG-GCCGC-CC-GGC-CUGCGGCg -5'
5211 3' -68.4 NC_001798.1 + 4371 0.69 0.283409
Target:  5'- -gGCGCgCCGGCGGcGgUGGugGUgGUg -3'
miRNA:   3'- agCGCGgGGCCGCC-CgGCCugCGgCG- -5'
5211 3' -68.4 NC_001798.1 + 4626 0.66 0.393436
Target:  5'- gUCGCGCUCCGGgGGGggcgaCGGGa-UCGUg -3'
miRNA:   3'- -AGCGCGGGGCCgCCCg----GCCUgcGGCG- -5'
5211 3' -68.4 NC_001798.1 + 5162 0.66 0.416134
Target:  5'- cCGCGCcgaucggguagauCCUGGCGGccgcGUCGGuaGCCGCg -3'
miRNA:   3'- aGCGCG-------------GGGCCGCC----CGGCCugCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 5307 0.75 0.098624
Target:  5'- cCGCGCCCCGGCucGCCGGGguuCCGCc -3'
miRNA:   3'- aGCGCGGGGCCGccCGGCCUgc-GGCG- -5'
5211 3' -68.4 NC_001798.1 + 5383 0.7 0.233
Target:  5'- cCGCGUCCguggCGGCGGcccGuuGGucGCGCCGCc -3'
miRNA:   3'- aGCGCGGG----GCCGCC---CggCC--UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 5556 0.66 0.40586
Target:  5'- cCGCGCUcccguuggcccccgCCGGCcccaaagGGGCCGGcgAgGUCGCc -3'
miRNA:   3'- aGCGCGG--------------GGCCG-------CCCGGCC--UgCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.