miRNA display CGI


Results 61 - 80 of 423 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5211 3' -68.4 NC_001798.1 + 18323 0.73 0.14766
Target:  5'- cCGUGUuugucUCCGGCGGGaCGGACGCCu- -3'
miRNA:   3'- aGCGCG-----GGGCCGCCCgGCCUGCGGcg -5'
5211 3' -68.4 NC_001798.1 + 18596 0.66 0.416932
Target:  5'- -aGCaGCCCCccCGGGuCCGcGCGCCGUc -3'
miRNA:   3'- agCG-CGGGGccGCCC-GGCcUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 19029 0.66 0.378258
Target:  5'- -aGCGCCCCGGCccccaccGGCUauaccaccugugGGugGUCGg -3'
miRNA:   3'- agCGCGGGGCCGc------CCGG------------CCugCGGCg -5'
5211 3' -68.4 NC_001798.1 + 20287 0.69 0.248909
Target:  5'- gCGCgGCCCCaGGCGGGuCCGGcaguaGCC-Ca -3'
miRNA:   3'- aGCG-CGGGG-CCGCCC-GGCCug---CGGcG- -5'
5211 3' -68.4 NC_001798.1 + 20356 0.66 0.416932
Target:  5'- -gGCGCugCCgGGCGGGUUcgGGGCgGCaCGCa -3'
miRNA:   3'- agCGCG--GGgCCGCCCGG--CCUG-CG-GCG- -5'
5211 3' -68.4 NC_001798.1 + 20493 0.72 0.16207
Target:  5'- gCGCGauCCCCGGaagacuGGCCGGggccugggguuGCGCCGCg -3'
miRNA:   3'- aGCGC--GGGGCCgc----CCGGCC-----------UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 21733 0.72 0.16974
Target:  5'- gUGUGCCCCuggugcGGCGGcGaCCgGGACGCCGg -3'
miRNA:   3'- aGCGCGGGG------CCGCC-C-GG-CCUGCGGCg -5'
5211 3' -68.4 NC_001798.1 + 21975 0.67 0.335138
Target:  5'- gCGgGCCCCGGgcaGGGCgCcaGCGCuCGCa -3'
miRNA:   3'- aGCgCGGGGCCg--CCCG-GccUGCG-GCG- -5'
5211 3' -68.4 NC_001798.1 + 22391 0.73 0.134427
Target:  5'- -gGCGgaaCCCCGGCGaGCCgGGGCGCgGCg -3'
miRNA:   3'- agCGC---GGGGCCGCcCGG-CCUGCGgCG- -5'
5211 3' -68.4 NC_001798.1 + 22879 0.66 0.391135
Target:  5'- gCGCgGCCCggguucggguggcaCGGUGGGCCGGAgGagaaCGa -3'
miRNA:   3'- aGCG-CGGG--------------GCCGCCCGGCCUgCg---GCg -5'
5211 3' -68.4 NC_001798.1 + 22964 0.69 0.248909
Target:  5'- -gGCgGCCCCGGCGuccggggaGGCCGucGACgagccuGCCGCg -3'
miRNA:   3'- agCG-CGGGGCCGC--------CCGGC--CUG------CGGCG- -5'
5211 3' -68.4 NC_001798.1 + 23492 0.68 0.314964
Target:  5'- cCGCGCCCCcGCcagcGCCGcagaccACGCCGCg -3'
miRNA:   3'- aGCGCGGGGcCGcc--CGGCc-----UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 23585 0.74 0.111183
Target:  5'- -gGCGCCCCGGCcgagcccgcccaGGGCCGaGC-CCGCc -3'
miRNA:   3'- agCGCGGGGCCG------------CCCGGCcUGcGGCG- -5'
5211 3' -68.4 NC_001798.1 + 23666 0.69 0.271506
Target:  5'- cCGgGCCCgcgCGGCGGuggccgGCCGcGACGCCa- -3'
miRNA:   3'- aGCgCGGG---GCCGCC------CGGC-CUGCGGcg -5'
5211 3' -68.4 NC_001798.1 + 23719 0.81 0.036966
Target:  5'- -gGCgGCCCCGGCGGGUCgagcuGGACGCCGa -3'
miRNA:   3'- agCG-CGGGGCCGCCCGG-----CCUGCGGCg -5'
5211 3' -68.4 NC_001798.1 + 23839 0.77 0.070224
Target:  5'- gCGUGCUguaCGGCGGGCUGGGCgacaGCCGCc -3'
miRNA:   3'- aGCGCGGg--GCCGCCCGGCCUG----CGGCG- -5'
5211 3' -68.4 NC_001798.1 + 23928 0.74 0.12732
Target:  5'- -gGCGCCCCGGCGcccgugugggcgccGaGCUGGGCGaCGCg -3'
miRNA:   3'- agCGCGGGGCCGC--------------C-CGGCCUGCgGCG- -5'
5211 3' -68.4 NC_001798.1 + 24176 0.66 0.385798
Target:  5'- -gGcCGCUUCGGCugGGGCCuGGCGCaCGUg -3'
miRNA:   3'- agC-GCGGGGCCG--CCCGGcCUGCG-GCG- -5'
5211 3' -68.4 NC_001798.1 + 24282 0.67 0.335138
Target:  5'- aCGCGCCCCuGCuGGCgCGcGAgaaCGCgGCg -3'
miRNA:   3'- aGCGCGGGGcCGcCCG-GC-CU---GCGgCG- -5'
5211 3' -68.4 NC_001798.1 + 24476 0.73 0.14766
Target:  5'- cUCGcCGCCCUGG-GGcGCCuGAgCGCCGCg -3'
miRNA:   3'- -AGC-GCGGGGCCgCC-CGGcCU-GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.