miRNA display CGI


Results 81 - 100 of 423 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5211 3' -68.4 NC_001798.1 + 24577 0.78 0.065253
Target:  5'- gCGCGCggaGGCGGGCCGcGugGCCGUg -3'
miRNA:   3'- aGCGCGgggCCGCCCGGC-CugCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 24672 0.73 0.140901
Target:  5'- cCGUGCCggGGCuGGCCGGAgcccggccCGCCGCg -3'
miRNA:   3'- aGCGCGGggCCGcCCGGCCU--------GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 24710 0.74 0.113868
Target:  5'- cCGCGCCCgGggcccGCGGGCgCGGccgcccCGCCGCa -3'
miRNA:   3'- aGCGCGGGgC-----CGCCCG-GCCu-----GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 24753 0.66 0.37751
Target:  5'- aCGCGCCCCGccuGCGcGCCuGGCugcgcgaGCUGCg -3'
miRNA:   3'- aGCGCGGGGC---CGCcCGGcCUG-------CGGCG- -5'
5211 3' -68.4 NC_001798.1 + 24835 0.68 0.295097
Target:  5'- gCGCGUggCCGGCGgcagcgaGGCCGccGugGCCGCc -3'
miRNA:   3'- aGCGCGg-GGCCGC-------CCGGC--CugCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 24874 0.69 0.253854
Target:  5'- gCGCGCCgugagccuggucgCCGGggcccUGGGCCcGGCGCUGCc -3'
miRNA:   3'- aGCGCGG-------------GGCC-----GCCCGGcCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 24985 0.71 0.203748
Target:  5'- cUGCGCCCCcuGCuGGCCGacaccguCGCCGCg -3'
miRNA:   3'- aGCGCGGGGc-CGcCCGGCcu-----GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 25074 0.72 0.173696
Target:  5'- cCcCGCCCCGGCcaGGgcgccGCCGGGCGgCGCc -3'
miRNA:   3'- aGcGCGGGGCCG--CC-----CGGCCUGCgGCG- -5'
5211 3' -68.4 NC_001798.1 + 25172 0.69 0.277407
Target:  5'- cCGCGCCCCccGCcccGCC-GACGCCGCc -3'
miRNA:   3'- aGCGCGGGGc-CGcc-CGGcCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 25210 0.71 0.199193
Target:  5'- cCGCGCCCC-GCGGcgcugacccGCCGGccCGCCGa -3'
miRNA:   3'- aGCGCGGGGcCGCC---------CGGCCu-GCGGCg -5'
5211 3' -68.4 NC_001798.1 + 25244 0.68 0.314964
Target:  5'- -aGgGCCCCGacccGCaGGGCgGcuGGCGCCGCc -3'
miRNA:   3'- agCgCGGGGC----CG-CCCGgC--CUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 25332 0.77 0.073738
Target:  5'- cUGCGCCCC-GCGGGCC-GugGCCGa -3'
miRNA:   3'- aGCGCGGGGcCGCCCGGcCugCGGCg -5'
5211 3' -68.4 NC_001798.1 + 25413 0.71 0.190351
Target:  5'- gCGCGCgCUGGCcucgcuGGCCGcGCGCUGCg -3'
miRNA:   3'- aGCGCGgGGCCGc-----CCGGCcUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 25463 0.69 0.252749
Target:  5'- gCGCGCCCgccgccuuCGGCccgcugcgcgccucGGGCCcgcuGCGCCGCg -3'
miRNA:   3'- aGCGCGGG--------GCCG--------------CCCGGcc--UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 25605 0.67 0.32831
Target:  5'- cCGCGCCgggGGCGGGCCccccccggaguGGucCGCCGa -3'
miRNA:   3'- aGCGCGGgg-CCGCCCGG-----------CCu-GCGGCg -5'
5211 3' -68.4 NC_001798.1 + 25704 0.66 0.378258
Target:  5'- -gGcCGCCUgGGCGGGCaacuGGACcGgCGCc -3'
miRNA:   3'- agC-GCGGGgCCGCCCGg---CCUG-CgGCG- -5'
5211 3' -68.4 NC_001798.1 + 25780 0.67 0.349103
Target:  5'- aCGCGggaCCUGGCcuucGCCGG-CGCCGUg -3'
miRNA:   3'- aGCGCg--GGGCCGcc--CGGCCuGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 25869 0.66 0.392668
Target:  5'- gCGCGCCgCGGacuggcccgccgaCGGGCCcguGGucuCGCgGCa -3'
miRNA:   3'- aGCGCGGgGCC-------------GCCCGG---CCu--GCGgCG- -5'
5211 3' -68.4 NC_001798.1 + 25959 0.76 0.085321
Target:  5'- gUGCGCUggCCGGCGGcGCgGGaccuGCGCCGCa -3'
miRNA:   3'- aGCGCGG--GGCCGCC-CGgCC----UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 25993 0.66 0.385798
Target:  5'- cCGUGCUggccuCCGGCcgcguguucGGGCCGGGggucuuCGCgCGCg -3'
miRNA:   3'- aGCGCGG-----GGCCG---------CCCGGCCU------GCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.