miRNA display CGI


Results 1 - 20 of 423 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5211 3' -68.4 NC_001798.1 + 154480 0.68 0.287672
Target:  5'- cCGCuCCCCcGCGGGCgccgccccucccccCGcGCGCCGCg -3'
miRNA:   3'- aGCGcGGGGcCGCCCG--------------GCcUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 154094 0.73 0.134427
Target:  5'- -aGCGCCggGGCGcGGCCGG-CGCCGg -3'
miRNA:   3'- agCGCGGggCCGC-CCGGCCuGCGGCg -5'
5211 3' -68.4 NC_001798.1 + 154045 0.69 0.271506
Target:  5'- gCGCGCCggGGCGcGGCaCGGcuggaGCGCCGg -3'
miRNA:   3'- aGCGCGGggCCGC-CCG-GCC-----UGCGGCg -5'
5211 3' -68.4 NC_001798.1 + 153753 0.69 0.254409
Target:  5'- -aGCGCCa-GGUGGGgCGGaaggggGCGCUGCg -3'
miRNA:   3'- agCGCGGggCCGCCCgGCC------UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 153671 0.72 0.173696
Target:  5'- gCGCGUCCgCgGGCGGGgacgCGGGgGCCGCc -3'
miRNA:   3'- aGCGCGGG-G-CCGCCCg---GCCUgCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 153419 0.69 0.277407
Target:  5'- gCGCGCCCaGGacccccguCGGGCCaGGCG-CGCg -3'
miRNA:   3'- aGCGCGGGgCC--------GCCCGGcCUGCgGCG- -5'
5211 3' -68.4 NC_001798.1 + 153371 0.66 0.416932
Target:  5'- cUCG-GCCgCCGccacGCGGcGCCGGAaccgGUCGCg -3'
miRNA:   3'- -AGCgCGG-GGC----CGCC-CGGCCUg---CGGCG- -5'
5211 3' -68.4 NC_001798.1 + 153302 0.67 0.363478
Target:  5'- uUCGUggGCCCgGGCucGGGCuCGGGC-CCGa -3'
miRNA:   3'- -AGCG--CGGGgCCG--CCCG-GCCUGcGGCg -5'
5211 3' -68.4 NC_001798.1 + 153232 0.71 0.199193
Target:  5'- cCGgGCCCgCGGCGGcGgaGGAC-CCGCg -3'
miRNA:   3'- aGCgCGGG-GCCGCC-CggCCUGcGGCG- -5'
5211 3' -68.4 NC_001798.1 + 153030 0.73 0.140901
Target:  5'- cCGgGCCCgcgCGGCGGcgcgcgguugGCCGG-CGCCGCc -3'
miRNA:   3'- aGCgCGGG---GCCGCC----------CGGCCuGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 152510 0.73 0.140901
Target:  5'- gCGCGCCCCGGCgGGGgCGGAgGgaGg -3'
miRNA:   3'- aGCGCGGGGCCG-CCCgGCCUgCggCg -5'
5211 3' -68.4 NC_001798.1 + 152074 0.66 0.378258
Target:  5'- -gGUcCCCCGaccgcuuaaGCGGGCCGGGgGUCGg -3'
miRNA:   3'- agCGcGGGGC---------CGCCCGGCCUgCGGCg -5'
5211 3' -68.4 NC_001798.1 + 151595 0.75 0.096278
Target:  5'- -gGCuGCCCUGGCGcucGGCCGGGgGCCGg -3'
miRNA:   3'- agCG-CGGGGCCGC---CCGGCCUgCGGCg -5'
5211 3' -68.4 NC_001798.1 + 150918 0.69 0.248909
Target:  5'- -gGCGCUCUucggggGGCGGGCgGGACGuaGUc -3'
miRNA:   3'- agCGCGGGG------CCGCCCGgCCUGCggCG- -5'
5211 3' -68.4 NC_001798.1 + 150856 0.73 0.137629
Target:  5'- gUCGgGUCgCGGCGGGCUGGGagguuCCGCg -3'
miRNA:   3'- -AGCgCGGgGCCGCCCGGCCUgc---GGCG- -5'
5211 3' -68.4 NC_001798.1 + 150562 0.66 0.401172
Target:  5'- -aGCGgCCCGGgGcccGCgGGGCGgCGCg -3'
miRNA:   3'- agCGCgGGGCCgCc--CGgCCUGCgGCG- -5'
5211 3' -68.4 NC_001798.1 + 150359 0.74 0.124931
Target:  5'- gCGCGUCCaccggcaCGGCGGGCggcgCGGGCccgGCCGCg -3'
miRNA:   3'- aGCGCGGG-------GCCGCCCG----GCCUG---CGGCG- -5'
5211 3' -68.4 NC_001798.1 + 150157 0.75 0.096278
Target:  5'- cCGCGCCucuuCCGG-GGGCgGGcCGCCGCc -3'
miRNA:   3'- aGCGCGG----GGCCgCCCGgCCuGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 149988 0.7 0.222875
Target:  5'- -gGCGCCCgCGGaCGccggggcgagcGGCCcGugGCCGCg -3'
miRNA:   3'- agCGCGGG-GCC-GC-----------CCGGcCugCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 149674 0.68 0.302033
Target:  5'- gCGgGCCCCGGgcucgGGGCCGcccucGCGUgGCg -3'
miRNA:   3'- aGCgCGGGGCCg----CCCGGCc----UGCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.